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Cluster: AG400_49_CGC37

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme k141_180512 k141_180512_5 5142 6734 - GH20
pfam k141_180512 k141_180512_6 6917 7771 - AP_endonuc_2
pfam k141_180512 k141_180512_7 7793 9307 - GFO_IDH_MocA | TAT_signal | GFO_IDH_MocA_C2
TC k141_180512 k141_180512_8 9416 10813 - 2.A.1.1.55
NULL(UNKNOWN) k141_180512 k141_180512_9 10824 12959 - NULL(UNKNOWN)
[View Structural Homologs]
pfam k141_180512 k141_180512_10 13048 14781 - SusD_RagB | SusD-like_3
TC k141_180512 k141_180512_11 14793 18260 - 1.B.14.6.1
STP k141_180512 k141_180512_12 18446 19501 - FecR
STP k141_180512 k141_180512_13 19651 20214 + Sigma70_r2 | Sigma70_r4_2
TC k141_180512 k141_180512_14 20536 23325 + 1.C.105.2.12
CAZyme k141_180512 k141_180512_15 23428 24714 - GH177
Gene ID: k141_180512_5
Type: CAZyme
Location: 5142 - 6734 (-)
Gene ID: k141_180512_6
Type: pfam
Location: 6917 - 7771 (-)
Gene ID: k141_180512_7
Type: pfam
Location: 7793 - 9307 (-)
Gene ID: k141_180512_8
Type: TC
Location: 9416 - 10813 (-)
Gene ID: k141_180512_9
Type:
Location: 10824 - 12959 (-)
Gene ID: k141_180512_10
Type: pfam
Location: 13048 - 14781 (-)
Gene ID: k141_180512_11
Type: TC
Location: 14793 - 18260 (-)
Gene ID: k141_180512_12
Type: STP
Location: 18446 - 19501 (-)
Gene ID: k141_180512_13
Type: STP
Location: 19651 - 20214 (+)
Gene ID: k141_180512_14
Type: TC
Location: 20536 - 23325 (+)
Gene ID: k141_180512_15
Type: CAZyme
Location: 23428 - 24714 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_180512_15 vegetarian > omnivore 1.82773 0.00290
k141_180512_15 vegetarian > vegan 1.87274 0.02197

🧭 Explore Read Mapping of CGC

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