Cluster: AG352_56_CGC13
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: AG352_56
- CGC Family ID: CGCFAM_00462
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_89448 | k141_89448_1 | 243 | 1337 | + | GH105 |
| CAZyme | k141_89448 | k141_89448_2 | 1815 | 2864 | - | GH105 |
| pfam | k141_89448 | k141_89448_3 | 2879 | 3733 | - | AP_endonuc_2 |
| NULL(UNKNOWN) | k141_89448 | k141_89448_4 | 3746 | 4450 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_89448 | k141_89448_5 | 4619 | 5971 | + | GH28 |
| TC | k141_89448 | k141_89448_6 | 5995 | 6984 | + | 8.A.5.1.1 |
| TF | k141_89448 | k141_89448_7 | 7050 | 7979 | - | HTH_AraC | HTH_AraC |
| TC | k141_89448 | k141_89448_8 | 8385 | 9338 | + | 3.A.1.1.10 |
| TC | k141_89448 | k141_89448_9 | 9354 | 10286 | + | 3.A.1.1.10 |
| STP | k141_89448 | k141_89448_10 | 10469 | 12124 | + | SBP_bac_1 |
| CAZyme | k141_89448 | k141_89448_11 | 12292 | 13965 | + | CE12 |
| CAZyme | k141_89448 | k141_89448_12 | 13984 | 16146 | + | GH112 |
| TC | k141_89448 | k141_89448_13 | 16377 | 17684 | + | 2.A.66.1.33 |
Gene ID: k141_89448_1
Type: CAZyme
Location: 243 - 1337 (+)
Type: CAZyme
Location: 243 - 1337 (+)
Gene ID: k141_89448_2
Type: CAZyme
Location: 1815 - 2864 (-)
Type: CAZyme
Location: 1815 - 2864 (-)
Gene ID: k141_89448_3
Type: pfam
Location: 2879 - 3733 (-)
Type: pfam
Location: 2879 - 3733 (-)
Gene ID: k141_89448_4
Type:
Location: 3746 - 4450 (-)
Type:
Location: 3746 - 4450 (-)
Gene ID: k141_89448_5
Type: CAZyme
Location: 4619 - 5971 (+)
Type: CAZyme
Location: 4619 - 5971 (+)
Gene ID: k141_89448_6
Type: TC
Location: 5995 - 6984 (+)
Type: TC
Location: 5995 - 6984 (+)
Gene ID: k141_89448_7
Type: TF
Location: 7050 - 7979 (-)
Type: TF
Location: 7050 - 7979 (-)
Gene ID: k141_89448_8
Type: TC
Location: 8385 - 9338 (+)
Type: TC
Location: 8385 - 9338 (+)
Gene ID: k141_89448_9
Type: TC
Location: 9354 - 10286 (+)
Type: TC
Location: 9354 - 10286 (+)
Gene ID: k141_89448_10
Type: STP
Location: 10469 - 12124 (+)
Type: STP
Location: 10469 - 12124 (+)
Gene ID: k141_89448_11
Type: CAZyme
Location: 12292 - 13965 (+)
Type: CAZyme
Location: 12292 - 13965 (+)
Gene ID: k141_89448_12
Type: CAZyme
Location: 13984 - 16146 (+)
Type: CAZyme
Location: 13984 - 16146 (+)
Gene ID: k141_89448_13
Type: TC
Location: 16377 - 17684 (+)
Type: TC
Location: 16377 - 17684 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger qucibialis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_89448_1 | vegan > omnivore | 1.22396 | 0.01238 |
| k141_89448_4 | vegan > omnivore | 1.22182 | 0.00863 |
| k141_89448_5 | vegan > omnivore | 1.10897 | 0.00863 |
| k141_89448_7 | vegan > omnivore | 1.16526 | 0.00863 |
| k141_89448_8 | vegan > omnivore | 1.19485 | 0.02239 |
| k141_89448_9 | vegan > omnivore | 1.10446 | 0.02239 |
| k141_89448_10 | vegan > omnivore | 1.23370 | 0.02239 |
| k141_89448_11 | vegan > omnivore | 1.26082 | 0.02239 |
| k141_89448_12 | vegan > omnivore | 1.06735 | 0.02239 |
| k141_89448_13 | vegan > omnivore | 1.40487 | 0.00863 |