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Cluster: AG278_bin.42_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_34112 k141_34112_59 65410 66927 + 8.A.59.2.1
TC k141_34112 k141_34112_60 66911 67930 + 3.A.1.2.14
TF k141_34112 k141_34112_61 67953 69569 + HTH_AraC | HTH_AraC
TF k141_34112 k141_34112_62 69586 70644 - GntR
TC k141_34112 k141_34112_63 71043 72050 + 3.A.1.2.1
TC k141_34112 k141_34112_64 72176 73675 + 3.A.1.2.23
TC k141_34112 k141_34112_65 73668 74762 + 3.A.1.2.14
TC k141_34112 k141_34112_66 74764 75786 + 3.A.1.2.14
TC k141_34112 k141_34112_67 75938 77749 + 1.B.52.2.2
CAZyme k141_34112 k141_34112_68 77855 80299 - GH94
TF k141_34112 k141_34112_69 80775 81797 + LacI
NULL(UNKNOWN) k141_34112 k141_34112_70 81858 83264 + NULL(UNKNOWN)
[View Structural Homologs]
TC k141_34112 k141_34112_71 83433 84350 + 3.A.1.1.4
TC k141_34112 k141_34112_72 84357 85223 + 3.A.1.1.13
pfam k141_34112 k141_34112_73 85343 86122 + DUF975
TC k141_34112 k141_34112_74 86183 87598 + 2.A.40.1.2
Gene ID: k141_34112_59
Type: TC
Location: 65410 - 66927 (+)
Gene ID: k141_34112_60
Type: TC
Location: 66911 - 67930 (+)
Gene ID: k141_34112_61
Type: TF
Location: 67953 - 69569 (+)
Gene ID: k141_34112_62
Type: TF
Location: 69586 - 70644 (-)
Gene ID: k141_34112_63
Type: TC
Location: 71043 - 72050 (+)
Gene ID: k141_34112_64
Type: TC
Location: 72176 - 73675 (+)
Gene ID: k141_34112_65
Type: TC
Location: 73668 - 74762 (+)
Gene ID: k141_34112_66
Type: TC
Location: 74764 - 75786 (+)
Gene ID: k141_34112_67
Type: TC
Location: 75938 - 77749 (+)
Gene ID: k141_34112_68
Type: CAZyme
Location: 77855 - 80299 (-)
Gene ID: k141_34112_69
Type: TF
Location: 80775 - 81797 (+)
Gene ID: k141_34112_70
Type:
Location: 81858 - 83264 (+)
Gene ID: k141_34112_71
Type: TC
Location: 83433 - 84350 (+)
Gene ID: k141_34112_72
Type: TC
Location: 84357 - 85223 (+)
Gene ID: k141_34112_73
Type: pfam
Location: 85343 - 86122 (+)
Gene ID: k141_34112_74
Type: TC
Location: 86183 - 87598 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_34112_65 vegan > omnivore 1.35459 0.03474
k141_34112_66 vegetarian > omnivore 1.08623 0.00900
k141_34112_71 vegan > omnivore 1.08623 0.00141

🧭 Explore Read Mapping of CGC

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