Cluster: AG261_bin.11_sub_CGC23
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 4
- Substrate:
- Genome ID: AG261_bin.11_sub
- CGC Family ID: CGCFAM_04517
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_124649 | k141_124649_47 | 48822 | 49457 | - | 9.B.143.2.3 |
| pfam | k141_124649 | k141_124649_48 | 49826 | 50044 | + | Zn_ribbon_13 |
| TC | k141_124649 | k141_124649_49 | 50134 | 52134 | + | 3.A.1.122.13 |
| pfam | k141_124649 | k141_124649_50 | 52304 | 52942 | + | VTT_dom |
| TC | k141_124649 | k141_124649_51 | 53040 | 54809 | - | 3.A.1.117.1 |
| TF | k141_124649 | k141_124649_52 | 55083 | 55949 | - | MarR |
| TC | k141_124649 | k141_124649_53 | 56240 | 57970 | - | 3.A.1.129.1 |
| TC | k141_124649 | k141_124649_54 | 57967 | 59712 | - | 3.A.1.129.1 |
| TC | k141_124649 | k141_124649_55 | 59949 | 60944 | - | 3.D.4.3.2 |
| TC | k141_124649 | k141_124649_56 | 60944 | 62425 | - | 3.D.4.3.2 |
| TC | k141_124649 | k141_124649_57 | 62738 | 64231 | - | 2.A.17.1.1 |
| CAZyme | k141_124649 | k141_124649_58 | 64423 | 66225 | - | GH13_39 |
| CAZyme | k141_124649 | k141_124649_59 | 66391 | 68790 | - | GT35 |
| CAZyme | k141_124649 | k141_124649_60 | 68829 | 70277 | - | GT5 |
| pfam | k141_124649 | k141_124649_61 | 70352 | 71494 | - | NTP_transferase | Hexapep_GlmU |
| pfam | k141_124649 | k141_124649_62 | 71484 | 72626 | - | NTP_transferase | NTP_transf_3 | Hexapep_GlmU |
| CAZyme | k141_124649 | k141_124649_63 | 72717 | 74720 | - | GH77 |
Gene ID: k141_124649_47
Type: TC
Location: 48822 - 49457 (-)
Type: TC
Location: 48822 - 49457 (-)
Gene ID: k141_124649_48
Type: pfam
Location: 49826 - 50044 (+)
Type: pfam
Location: 49826 - 50044 (+)
Gene ID: k141_124649_49
Type: TC
Location: 50134 - 52134 (+)
Type: TC
Location: 50134 - 52134 (+)
Gene ID: k141_124649_50
Type: pfam
Location: 52304 - 52942 (+)
Type: pfam
Location: 52304 - 52942 (+)
Gene ID: k141_124649_51
Type: TC
Location: 53040 - 54809 (-)
Type: TC
Location: 53040 - 54809 (-)
Gene ID: k141_124649_52
Type: TF
Location: 55083 - 55949 (-)
Type: TF
Location: 55083 - 55949 (-)
Gene ID: k141_124649_53
Type: TC
Location: 56240 - 57970 (-)
Type: TC
Location: 56240 - 57970 (-)
Gene ID: k141_124649_54
Type: TC
Location: 57967 - 59712 (-)
Type: TC
Location: 57967 - 59712 (-)
Gene ID: k141_124649_55
Type: TC
Location: 59949 - 60944 (-)
Type: TC
Location: 59949 - 60944 (-)
Gene ID: k141_124649_56
Type: TC
Location: 60944 - 62425 (-)
Type: TC
Location: 60944 - 62425 (-)
Gene ID: k141_124649_57
Type: TC
Location: 62738 - 64231 (-)
Type: TC
Location: 62738 - 64231 (-)
Gene ID: k141_124649_58
Type: CAZyme
Location: 64423 - 66225 (-)
Type: CAZyme
Location: 64423 - 66225 (-)
Gene ID: k141_124649_59
Type: CAZyme
Location: 66391 - 68790 (-)
Type: CAZyme
Location: 66391 - 68790 (-)
Gene ID: k141_124649_60
Type: CAZyme
Location: 68829 - 70277 (-)
Type: CAZyme
Location: 68829 - 70277 (-)
Gene ID: k141_124649_61
Type: pfam
Location: 70352 - 71494 (-)
Type: pfam
Location: 70352 - 71494 (-)
Gene ID: k141_124649_62
Type: pfam
Location: 71484 - 72626 (-)
Type: pfam
Location: 71484 - 72626 (-)
Gene ID: k141_124649_63
Type: CAZyme
Location: 72717 - 74720 (-)
Type: CAZyme
Location: 72717 - 74720 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Lactococcus
Species
Lactococcus taiwanensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.