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Cluster: AG093_52_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme k141_212373 k141_212373_39 43853 44959 + GT4
CAZyme k141_212373 k141_212373_40 44981 46111 + GT4
CAZyme k141_212373 k141_212373_41 46108 47187 + GT4
pfam k141_212373 k141_212373_42 47388 48329 + Ldh_1_N | Ldh_1_C
pfam k141_212373 k141_212373_43 48550 49935 + Lyase_1 | FumaraseC_C
TC k141_212373 k141_212373_44 50024 50836 - 3.D.6.1.2
TC k141_212373 k141_212373_45 50849 51427 - 3.D.6.1.4
TC k141_212373 k141_212373_46 51424 52083 - 3.D.6.1.2
pfam k141_212373 k141_212373_47 52076 52681 - FMN_bind
TC k141_212373 k141_212373_48 52681 53739 - 3.D.6.1.2
TC k141_212373 k141_212373_49 53924 55315 - 3.D.6.1.2
Gene ID: k141_212373_39
Type: CAZyme
Location: 43853 - 44959 (+)
Gene ID: k141_212373_40
Type: CAZyme
Location: 44981 - 46111 (+)
Gene ID: k141_212373_41
Type: CAZyme
Location: 46108 - 47187 (+)
Gene ID: k141_212373_42
Type: pfam
Location: 47388 - 48329 (+)
Gene ID: k141_212373_43
Type: pfam
Location: 48550 - 49935 (+)
Gene ID: k141_212373_44
Type: TC
Location: 50024 - 50836 (-)
Gene ID: k141_212373_45
Type: TC
Location: 50849 - 51427 (-)
Gene ID: k141_212373_46
Type: TC
Location: 51424 - 52083 (-)
Gene ID: k141_212373_47
Type: pfam
Location: 52076 - 52681 (-)
Gene ID: k141_212373_48
Type: TC
Location: 52681 - 53739 (-)
Gene ID: k141_212373_49
Type: TC
Location: 53924 - 55315 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Spirochaetota
→
Class
Spirochaetia
→
Order
Treponematales
→
Family
Treponemataceae
→
Genus
Treponema_D
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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