Cluster: AG085_9_CGC14
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 7
- Substrate:
- Genome ID: AG085_9
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_116333 | k141_116333_4 | 2863 | 4011 | + | GT4 |
| pfam | k141_116333 | k141_116333_5 | 4109 | 4807 | + | WaaY |
| CAZyme | k141_116333 | k141_116333_6 | 4830 | 6011 | + | GT4 |
| pfam | k141_116333 | k141_116333_7 | 6008 | 7018 | + | GINT1_N |
| CAZyme | k141_116333 | k141_116333_8 | 7046 | 8218 | + | GT4 |
| CAZyme | k141_116333 | k141_116333_9 | 8243 | 9475 | + | GT4 |
| CAZyme | k141_116333 | k141_116333_10 | 9612 | 10793 | + | GT4 |
| pfam | k141_116333 | k141_116333_11 | 10844 | 12022 | + | 8xMP |
| CAZyme | k141_116333 | k141_116333_12 | 12467 | 13477 | + | GT4 |
| pfam | k141_116333 | k141_116333_13 | 13610 | 14362 | + | WaaY | Kdo |
| pfam | k141_116333 | k141_116333_14 | 14507 | 15853 | - | AAA_14 | DUF4143 |
| CAZyme | k141_116333 | k141_116333_15 | 15985 | 16809 | - | GT2 |
| TC | k141_116333 | k141_116333_16 | 16957 | 18084 | + | 3.D.2.2.1 |
| TC | k141_116333 | k141_116333_17 | 18140 | 18424 | + | 3.D.2.2.2 |
| TC | k141_116333 | k141_116333_18 | 18429 | 19949 | + | 3.D.2.2.1 |
Gene ID: k141_116333_4
Type: CAZyme
Location: 2863 - 4011 (+)
Type: CAZyme
Location: 2863 - 4011 (+)
Gene ID: k141_116333_5
Type: pfam
Location: 4109 - 4807 (+)
Type: pfam
Location: 4109 - 4807 (+)
Gene ID: k141_116333_6
Type: CAZyme
Location: 4830 - 6011 (+)
Type: CAZyme
Location: 4830 - 6011 (+)
Gene ID: k141_116333_7
Type: pfam
Location: 6008 - 7018 (+)
Type: pfam
Location: 6008 - 7018 (+)
Gene ID: k141_116333_8
Type: CAZyme
Location: 7046 - 8218 (+)
Type: CAZyme
Location: 7046 - 8218 (+)
Gene ID: k141_116333_9
Type: CAZyme
Location: 8243 - 9475 (+)
Type: CAZyme
Location: 8243 - 9475 (+)
Gene ID: k141_116333_10
Type: CAZyme
Location: 9612 - 10793 (+)
Type: CAZyme
Location: 9612 - 10793 (+)
Gene ID: k141_116333_11
Type: pfam
Location: 10844 - 12022 (+)
Type: pfam
Location: 10844 - 12022 (+)
Gene ID: k141_116333_12
Type: CAZyme
Location: 12467 - 13477 (+)
Type: CAZyme
Location: 12467 - 13477 (+)
Gene ID: k141_116333_13
Type: pfam
Location: 13610 - 14362 (+)
Type: pfam
Location: 13610 - 14362 (+)
Gene ID: k141_116333_14
Type: pfam
Location: 14507 - 15853 (-)
Type: pfam
Location: 14507 - 15853 (-)
Gene ID: k141_116333_15
Type: CAZyme
Location: 15985 - 16809 (-)
Type: CAZyme
Location: 15985 - 16809 (-)
Gene ID: k141_116333_16
Type: TC
Location: 16957 - 18084 (+)
Type: TC
Location: 16957 - 18084 (+)
Gene ID: k141_116333_17
Type: TC
Location: 18140 - 18424 (+)
Type: TC
Location: 18140 - 18424 (+)
Gene ID: k141_116333_18
Type: TC
Location: 18429 - 19949 (+)
Type: TC
Location: 18429 - 19949 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Opitutales
Family
UBA953
Genus
Spyradosoma
Species
Spyradosoma merdigallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.