Cluster: AG078_28_CGC11
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: AG078_28
- CGC Family ID: CGCFAM_00018
- Continent: Africa
- Source Study: Maghini et al., 2025 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_13373 | k141_13373_11 | 10374 | 13154 | + | GH73 |
| NULL(UNKNOWN) | k141_13373 | k141_13373_12 | 13330 | 14418 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_13373 | k141_13373_13 | 14649 | 15704 | + | 9.B.18.2.1 |
| pfam | k141_13373 | k141_13373_14 | 15706 | 16923 | + | Epimerase | Polysacc_synt_C |
| CAZyme | k141_13373 | k141_13373_15 | 16983 | 18047 | + | GT4 |
| pfam | k141_13373 | k141_13373_16 | 18068 | 19243 | + | Epimerase_2 |
| CAZyme | k141_13373 | k141_13373_17 | 19243 | 20394 | + | GT4 |
Gene ID: k141_13373_11
Type: CAZyme
Location: 10374 - 13154 (+)
Type: CAZyme
Location: 10374 - 13154 (+)
Gene ID: k141_13373_12
Type:
Location: 13330 - 14418 (+)
Type:
Location: 13330 - 14418 (+)
Gene ID: k141_13373_13
Type: TC
Location: 14649 - 15704 (+)
Type: TC
Location: 14649 - 15704 (+)
Gene ID: k141_13373_14
Type: pfam
Location: 15706 - 16923 (+)
Type: pfam
Location: 15706 - 16923 (+)
Gene ID: k141_13373_15
Type: CAZyme
Location: 16983 - 18047 (+)
Type: CAZyme
Location: 16983 - 18047 (+)
Gene ID: k141_13373_16
Type: pfam
Location: 18068 - 19243 (+)
Type: pfam
Location: 18068 - 19243 (+)
Gene ID: k141_13373_17
Type: CAZyme
Location: 19243 - 20394 (+)
Type: CAZyme
Location: 19243 - 20394 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_13373_11 | vegetarian > omnivore | 2.00921 | 0.01185 |
| k141_13373_12 | vegetarian > omnivore | 1.72353 | 0.01185 |
| k141_13373_14 | vegetarian > omnivore | 1.28678 | 0.01185 |
| k141_13373_14 | vegetarian > vegan | 1.45655 | 0.01867 |
| k141_13373_15 | vegetarian > omnivore | 2.92135 | 0.01185 |