Cluster: A89.CMAG_1_CGC20
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 5
- Substrate:
- Genome ID: A89.CMAG_1
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A89_contig_798 | A89_contig_798_1485 | 1628507 | 1630150 | - | GH73 |
| peptidase | A89_contig_798 | A89_contig_798_1486 | 1630379 | 1631938 | - | C40.010 |
| TC | A89_contig_798 | A89_contig_798_1487 | 1632189 | 1633730 | - | 1.C.105.2.6 |
| NULL(UNKNOWN) | A89_contig_798 | A89_contig_798_1488 | 1633681 | 1633782 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | A89_contig_798 | A89_contig_798_1489 | 1633860 | 1634936 | - | Acyl_transf_3 |
| TC | A89_contig_798 | A89_contig_798_1490 | 1635034 | 1636455 | - | 2.A.66.2.16 |
| STP | A89_contig_798 | A89_contig_798_1491 | 1636459 | 1637580 | - | Pyr_redox |
| CAZyme | A89_contig_798 | A89_contig_798_1492 | 1637700 | 1638716 | - | GT2 |
| CAZyme | A89_contig_798 | A89_contig_798_1493 | 1638723 | 1639502 | - | GT32 |
| CAZyme | A89_contig_798 | A89_contig_798_1494 | 1639520 | 1640533 | - | GT113 |
| NULL(UNKNOWN) | A89_contig_798 | A89_contig_798_1495 | 1640598 | 1641239 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | A89_contig_798 | A89_contig_798_1496 | 1641236 | 1642435 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A89_contig_798 | A89_contig_798_1497 | 1642453 | 1643223 | - | GT111 |
| TC | A89_contig_798 | A89_contig_798_1498 | 1643241 | 1643924 | - | 9.B.18.1.2 |
| pfam | A89_contig_798 | A89_contig_798_1499 | 1644043 | 1644843 | - | RecX_HTH2 | RecX_HTH3 | RecX_HTH1 |
| TC | A89_contig_798 | A89_contig_798_1500 | 1644926 | 1645846 | - | 9.B.126.2.5 |
Gene ID: A89_contig_798_1485
Type: CAZyme
Location: 1628507 - 1630150 (-)
Type: CAZyme
Location: 1628507 - 1630150 (-)
Gene ID: A89_contig_798_1486
Type: peptidase
Location: 1630379 - 1631938 (-)
Type: peptidase
Location: 1630379 - 1631938 (-)
Gene ID: A89_contig_798_1487
Type: TC
Location: 1632189 - 1633730 (-)
Type: TC
Location: 1632189 - 1633730 (-)
Gene ID: A89_contig_798_1488
Type:
Location: 1633681 - 1633782 (-)
Type:
Location: 1633681 - 1633782 (-)
Gene ID: A89_contig_798_1489
Type: pfam
Location: 1633860 - 1634936 (-)
Type: pfam
Location: 1633860 - 1634936 (-)
Gene ID: A89_contig_798_1490
Type: TC
Location: 1635034 - 1636455 (-)
Type: TC
Location: 1635034 - 1636455 (-)
Gene ID: A89_contig_798_1491
Type: STP
Location: 1636459 - 1637580 (-)
Type: STP
Location: 1636459 - 1637580 (-)
Gene ID: A89_contig_798_1492
Type: CAZyme
Location: 1637700 - 1638716 (-)
Type: CAZyme
Location: 1637700 - 1638716 (-)
Gene ID: A89_contig_798_1493
Type: CAZyme
Location: 1638723 - 1639502 (-)
Type: CAZyme
Location: 1638723 - 1639502 (-)
Gene ID: A89_contig_798_1494
Type: CAZyme
Location: 1639520 - 1640533 (-)
Type: CAZyme
Location: 1639520 - 1640533 (-)
Gene ID: A89_contig_798_1495
Type:
Location: 1640598 - 1641239 (-)
Type:
Location: 1640598 - 1641239 (-)
Gene ID: A89_contig_798_1496
Type:
Location: 1641236 - 1642435 (-)
Type:
Location: 1641236 - 1642435 (-)
Gene ID: A89_contig_798_1497
Type: CAZyme
Location: 1642453 - 1643223 (-)
Type: CAZyme
Location: 1642453 - 1643223 (-)
Gene ID: A89_contig_798_1498
Type: TC
Location: 1643241 - 1643924 (-)
Type: TC
Location: 1643241 - 1643924 (-)
Gene ID: A89_contig_798_1499
Type: pfam
Location: 1644043 - 1644843 (-)
Type: pfam
Location: 1644043 - 1644843 (-)
Gene ID: A89_contig_798_1500
Type: TC
Location: 1644926 - 1645846 (-)
Type: TC
Location: 1644926 - 1645846 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Limosilactobacillus
Species
Limosilactobacillus mucosae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.