Cluster: A89.CMAG_1_CGC13
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate: alpha-glucan
- Genome ID: A89.CMAG_1
- CGC Family ID: CGCFAM_00004
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A89_contig_798 | A89_contig_798_1090 | 1202398 | 1203264 | - | GT8 |
| STP | A89_contig_798 | A89_contig_798_1091 | 1203477 | 1204133 | + | HD |
| pfam | A89_contig_798 | A89_contig_798_1092 | 1204235 | 1205368 | - | UPF0020 | THUMP | RlmL_1st |
| TC | A89_contig_798 | A89_contig_798_1093 | 1205462 | 1206688 | - | 2.A.1.2.18 |
| STP | A89_contig_798 | A89_contig_798_1094 | 1206774 | 1207250 | - | NUDIX |
| pfam | A89_contig_798 | A89_contig_798_1095 | 1207440 | 1207916 | - | PMSR |
| TC | A89_contig_798 | A89_contig_798_1096 | 1207997 | 1208848 | - | 3.A.1.24.3 |
| CAZyme | A89_contig_798 | A89_contig_798_1097 | 1209507 | 1211342 | - | GH13_39 |
| CAZyme | A89_contig_798 | A89_contig_798_1098 | 1211355 | 1213754 | - | GT35 |
| CAZyme | A89_contig_798 | A89_contig_798_1099 | 1213790 | 1215217 | - | GT5 |
| pfam | A89_contig_798 | A89_contig_798_1100 | 1215220 | 1216383 | - | NTP_transferase | Hexapep_GlmU |
| pfam | A89_contig_798 | A89_contig_798_1101 | 1216373 | 1217524 | - | NTP_transferase | Hexapep_GlmU |
| CAZyme | A89_contig_798 | A89_contig_798_1102 | 1217554 | 1219521 | - | CBM48 | GH13_9 |
Gene ID: A89_contig_798_1090
Type: CAZyme
Location: 1202398 - 1203264 (-)
Type: CAZyme
Location: 1202398 - 1203264 (-)
Gene ID: A89_contig_798_1091
Type: STP
Location: 1203477 - 1204133 (+)
Type: STP
Location: 1203477 - 1204133 (+)
Gene ID: A89_contig_798_1092
Type: pfam
Location: 1204235 - 1205368 (-)
Type: pfam
Location: 1204235 - 1205368 (-)
Gene ID: A89_contig_798_1093
Type: TC
Location: 1205462 - 1206688 (-)
Type: TC
Location: 1205462 - 1206688 (-)
Gene ID: A89_contig_798_1094
Type: STP
Location: 1206774 - 1207250 (-)
Type: STP
Location: 1206774 - 1207250 (-)
Gene ID: A89_contig_798_1095
Type: pfam
Location: 1207440 - 1207916 (-)
Type: pfam
Location: 1207440 - 1207916 (-)
Gene ID: A89_contig_798_1096
Type: TC
Location: 1207997 - 1208848 (-)
Type: TC
Location: 1207997 - 1208848 (-)
Gene ID: A89_contig_798_1097
Type: CAZyme
Location: 1209507 - 1211342 (-)
Type: CAZyme
Location: 1209507 - 1211342 (-)
Gene ID: A89_contig_798_1098
Type: CAZyme
Location: 1211355 - 1213754 (-)
Type: CAZyme
Location: 1211355 - 1213754 (-)
Gene ID: A89_contig_798_1099
Type: CAZyme
Location: 1213790 - 1215217 (-)
Type: CAZyme
Location: 1213790 - 1215217 (-)
Gene ID: A89_contig_798_1100
Type: pfam
Location: 1215220 - 1216383 (-)
Type: pfam
Location: 1215220 - 1216383 (-)
Gene ID: A89_contig_798_1101
Type: pfam
Location: 1216373 - 1217524 (-)
Type: pfam
Location: 1216373 - 1217524 (-)
Gene ID: A89_contig_798_1102
Type: CAZyme
Location: 1217554 - 1219521 (-)
Type: CAZyme
Location: 1217554 - 1219521 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Limosilactobacillus
Species
Limosilactobacillus mucosae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.