Cluster: A6.CMAG_3_CGC33
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 7
- Substrate:
- Genome ID: A6.CMAG_3
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A6_contig_1141 | A6_contig_1141_1780 | 2171544 | 2172728 | - | GH172 |
| CAZyme | A6_contig_1141 | A6_contig_1141_1781 | 2173052 | 2175301 | - | GT2 |
| CAZyme | A6_contig_1141 | A6_contig_1141_1782 | 2175556 | 2176866 | + | CBM5 | GH18 |
| STP | A6_contig_1141 | A6_contig_1141_1783 | 2176978 | 2179434 | + | EAL | GGDEF |
| TF | A6_contig_1141 | A6_contig_1141_1784 | 2179567 | 2180583 | + | LacI |
| CAZyme | A6_contig_1141 | A6_contig_1141_1785 | 2180677 | 2181984 | - | CE9 |
| sulfatase | A6_contig_1141 | A6_contig_1141_1786 | 2182305 | 2183117 | - | S1_9 |
| CAZyme | A6_contig_1141 | A6_contig_1141_1787 | 2183187 | 2185193 | - | GH20 |
| pfam | A6_contig_1141 | A6_contig_1141_1788 | 2185321 | 2186253 | - | ROK |
| TC | A6_contig_1141 | A6_contig_1141_1789 | 2186359 | 2187318 | - | 3.A.1.1.48 |
| TC | A6_contig_1141 | A6_contig_1141_1790 | 2187315 | 2188181 | - | 3.A.1.1.48 |
| TC | A6_contig_1141 | A6_contig_1141_1791 | 2188521 | 2189828 | - | 3.A.1.1.48 |
| pfam | A6_contig_1141 | A6_contig_1141_1792 | 2190123 | 2191247 | + | ROK |
| TC | A6_contig_1141 | A6_contig_1141_1793 | 2191612 | 2193171 | - | 2.A.2.2.3 |
| CAZyme | A6_contig_1141 | A6_contig_1141_1794 | 2193532 | 2196594 | + | GH2 |
| pfam | A6_contig_1141 | A6_contig_1141_1795 | 2196736 | 2197434 | - | TENA_THI-4 |
| CAZyme | A6_contig_1141 | A6_contig_1141_1796 | 2197623 | 2199791 | - | GH2 |
Gene ID: A6_contig_1141_1780
Type: CAZyme
Location: 2171544 - 2172728 (-)
Type: CAZyme
Location: 2171544 - 2172728 (-)
Gene ID: A6_contig_1141_1781
Type: CAZyme
Location: 2173052 - 2175301 (-)
Type: CAZyme
Location: 2173052 - 2175301 (-)
Gene ID: A6_contig_1141_1782
Type: CAZyme
Location: 2175556 - 2176866 (+)
Type: CAZyme
Location: 2175556 - 2176866 (+)
Gene ID: A6_contig_1141_1783
Type: STP
Location: 2176978 - 2179434 (+)
Type: STP
Location: 2176978 - 2179434 (+)
Gene ID: A6_contig_1141_1784
Type: TF
Location: 2179567 - 2180583 (+)
Type: TF
Location: 2179567 - 2180583 (+)
Gene ID: A6_contig_1141_1785
Type: CAZyme
Location: 2180677 - 2181984 (-)
Type: CAZyme
Location: 2180677 - 2181984 (-)
Gene ID: A6_contig_1141_1786
Type: sulfatase
Location: 2182305 - 2183117 (-)
Type: sulfatase
Location: 2182305 - 2183117 (-)
Gene ID: A6_contig_1141_1787
Type: CAZyme
Location: 2183187 - 2185193 (-)
Type: CAZyme
Location: 2183187 - 2185193 (-)
Gene ID: A6_contig_1141_1788
Type: pfam
Location: 2185321 - 2186253 (-)
Type: pfam
Location: 2185321 - 2186253 (-)
Gene ID: A6_contig_1141_1789
Type: TC
Location: 2186359 - 2187318 (-)
Type: TC
Location: 2186359 - 2187318 (-)
Gene ID: A6_contig_1141_1790
Type: TC
Location: 2187315 - 2188181 (-)
Type: TC
Location: 2187315 - 2188181 (-)
Gene ID: A6_contig_1141_1791
Type: TC
Location: 2188521 - 2189828 (-)
Type: TC
Location: 2188521 - 2189828 (-)
Gene ID: A6_contig_1141_1792
Type: pfam
Location: 2190123 - 2191247 (+)
Type: pfam
Location: 2190123 - 2191247 (+)
Gene ID: A6_contig_1141_1793
Type: TC
Location: 2191612 - 2193171 (-)
Type: TC
Location: 2191612 - 2193171 (-)
Gene ID: A6_contig_1141_1794
Type: CAZyme
Location: 2193532 - 2196594 (+)
Type: CAZyme
Location: 2193532 - 2196594 (+)
Gene ID: A6_contig_1141_1795
Type: pfam
Location: 2196736 - 2197434 (-)
Type: pfam
Location: 2196736 - 2197434 (-)
Gene ID: A6_contig_1141_1796
Type: CAZyme
Location: 2197623 - 2199791 (-)
Type: CAZyme
Location: 2197623 - 2199791 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A6_contig_1141_1781 | vegan > omnivore | 3.91919 | 0.00138 |
| A6_contig_1141_1781 | vegetarian > omnivore | 3.72531 | 0.00565 |
| A6_contig_1141_1782 | vegan > omnivore | 2.43539 | 0.00138 |
| A6_contig_1141_1782 | vegetarian > omnivore | 2.23124 | 0.00565 |
| A6_contig_1141_1783 | vegan > omnivore | 2.34191 | 0.00138 |
| A6_contig_1141_1783 | vegetarian > omnivore | 1.97926 | 0.00565 |
| A6_contig_1141_1784 | vegetarian > omnivore | 1.02698 | 0.00565 |
| A6_contig_1141_1785 | vegetarian > omnivore | 1.17803 | 0.00565 |
| A6_contig_1141_1785 | vegan > omnivore | 1.04037 | 0.00138 |
| A6_contig_1141_1786 | vegan > omnivore | 1.82367 | 0.00138 |
| A6_contig_1141_1787 | vegan > omnivore | 2.12890 | 0.00138 |
| A6_contig_1141_1788 | vegetarian > omnivore | 13.90585 | 0.00565 |
| A6_contig_1141_1788 | vegan > omnivore | 16.09198 | 0.00138 |
| A6_contig_1141_1790 | vegan > omnivore | 1.46841 | 0.00138 |
| A6_contig_1141_1791 | vegan > omnivore | 1.07961 | 0.00138 |
| A6_contig_1141_1792 | vegetarian > omnivore | 1.11335 | 0.00565 |
| A6_contig_1141_1795 | vegan > omnivore | 3.31639 | 0.00138 |
| A6_contig_1141_1795 | vegetarian > omnivore | 1.85077 | 0.00565 |