Cluster: A6.CMAG_3_CGC31
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: A6.CMAG_3
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A6_contig_1141 | A6_contig_1141_1758 | 2134274 | 2135974 | + | CE20 |
| NULL(UNKNOWN) | A6_contig_1141 | A6_contig_1141_1759 | 2136106 | 2136471 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | A6_contig_1141 | A6_contig_1141_1760 | 2137326 | 2137898 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A6_contig_1141 | A6_contig_1141_1761 | 2137852 | 2138502 | - | 2.A.1.3.39 |
Gene ID: A6_contig_1141_1758
Type: CAZyme
Location: 2134274 - 2135974 (+)
Type: CAZyme
Location: 2134274 - 2135974 (+)
Gene ID: A6_contig_1141_1759
Type:
Location: 2136106 - 2136471 (-)
Type:
Location: 2136106 - 2136471 (-)
Gene ID: A6_contig_1141_1760
Type:
Location: 2137326 - 2137898 (-)
Type:
Location: 2137326 - 2137898 (-)
Gene ID: A6_contig_1141_1761
Type: TC
Location: 2137852 - 2138502 (-)
Type: TC
Location: 2137852 - 2138502 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A6_contig_1141_1758 | vegan > omnivore | 3.94436 | 0.00138 |
| A6_contig_1141_1758 | vegetarian > omnivore | 3.28568 | 0.00565 |
| A6_contig_1141_1760 | vegan > omnivore | 2.18297 | 0.00138 |
| A6_contig_1141_1761 | vegan > omnivore | 6.80024 | 0.00138 |
| A6_contig_1141_1761 | vegetarian > omnivore | 4.32394 | 0.00565 |