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Cluster: A6.CMAG_3_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC A6_contig_1141 A6_contig_1141_1652 1996111 1997652 - 2.A.1.3.61
TC A6_contig_1141 A6_contig_1141_1653 1997841 1999127 + 9.B.34.1.2
pfam A6_contig_1141 A6_contig_1141_1654 1999138 1999890 - GmrSD_C
pfam A6_contig_1141 A6_contig_1141_1655 1999985 2000839 - Aldo_ket_red
TC A6_contig_1141 A6_contig_1141_1656 2001086 2002417 + 2.A.55.3.3
TF A6_contig_1141 A6_contig_1141_1657 2002810 2003886 - LacI
CAZyme A6_contig_1141 A6_contig_1141_1658 2004038 2006128 - GH42
TC A6_contig_1141 A6_contig_1141_1659 2006374 2007387 - 3.A.1.1.48
TC A6_contig_1141 A6_contig_1141_1660 2007445 2008380 - 3.A.1.1.48
TC A6_contig_1141 A6_contig_1141_1661 2008664 2010025 - 3.A.1.1.34
peptidase A6_contig_1141 A6_contig_1141_1662 2010527 2011270 - C26.UPW
pfam A6_contig_1141 A6_contig_1141_1663 2011391 2012266 - SOR_SNZ | ThiG
TC A6_contig_1141 A6_contig_1141_1664 2012628 2016827 - 3.A.1.106.12
TC A6_contig_1141 A6_contig_1141_1665 2017474 2019297 + 4.C.1.1.14
Gene ID: A6_contig_1141_1652
Type: TC
Location: 1996111 - 1997652 (-)
Gene ID: A6_contig_1141_1653
Type: TC
Location: 1997841 - 1999127 (+)
Gene ID: A6_contig_1141_1654
Type: pfam
Location: 1999138 - 1999890 (-)
Gene ID: A6_contig_1141_1655
Type: pfam
Location: 1999985 - 2000839 (-)
Gene ID: A6_contig_1141_1656
Type: TC
Location: 2001086 - 2002417 (+)
Gene ID: A6_contig_1141_1657
Type: TF
Location: 2002810 - 2003886 (-)
Gene ID: A6_contig_1141_1658
Type: CAZyme
Location: 2004038 - 2006128 (-)
Gene ID: A6_contig_1141_1659
Type: TC
Location: 2006374 - 2007387 (-)
Gene ID: A6_contig_1141_1660
Type: TC
Location: 2007445 - 2008380 (-)
Gene ID: A6_contig_1141_1661
Type: TC
Location: 2008664 - 2010025 (-)
Gene ID: A6_contig_1141_1662
Type: peptidase
Location: 2010527 - 2011270 (-)
Gene ID: A6_contig_1141_1663
Type: pfam
Location: 2011391 - 2012266 (-)
Gene ID: A6_contig_1141_1664
Type: TC
Location: 2012628 - 2016827 (-)
Gene ID: A6_contig_1141_1665
Type: TC
Location: 2017474 - 2019297 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
A6_contig_1141_1653 vegetarian > omnivore 1.06151 0.00565

🧭 Explore Read Mapping of CGC

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