Cluster: A6.CMAG_3_CGC1
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: A6.CMAG_3
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A6_contig_1141 | A6_contig_1141_4 | 9404 | 11839 | - | GH3 |
| NULL(UNKNOWN) | A6_contig_1141 | A6_contig_1141_5 | 12265 | 12507 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A6_contig_1141 | A6_contig_1141_6 | 12592 | 15117 | + | GH31_15 |
| CAZyme | A6_contig_1141 | A6_contig_1141_7 | 15705 | 17546 | + | GH13_31 |
| TF | A6_contig_1141 | A6_contig_1141_8 | 17978 | 18991 | - | LacI |
| NULL(UNKNOWN) | A6_contig_1141 | A6_contig_1141_9 | 19178 | 19336 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A6_contig_1141 | A6_contig_1141_10 | 19454 | 20527 | + | 3.A.1.1.45 |
| TC | A6_contig_1141 | A6_contig_1141_11 | 20540 | 21394 | + | 3.A.1.1.45 |
| TC | A6_contig_1141 | A6_contig_1141_12 | 21391 | 22227 | + | 3.A.1.1.45 |
| TC | A6_contig_1141 | A6_contig_1141_13 | 22267 | 22848 | + | 9.B.28.1.3 |
Gene ID: A6_contig_1141_4
Type: CAZyme
Location: 9404 - 11839 (-)
Type: CAZyme
Location: 9404 - 11839 (-)
Gene ID: A6_contig_1141_5
Type:
Location: 12265 - 12507 (+)
Type:
Location: 12265 - 12507 (+)
Gene ID: A6_contig_1141_6
Type: CAZyme
Location: 12592 - 15117 (+)
Type: CAZyme
Location: 12592 - 15117 (+)
Gene ID: A6_contig_1141_7
Type: CAZyme
Location: 15705 - 17546 (+)
Type: CAZyme
Location: 15705 - 17546 (+)
Gene ID: A6_contig_1141_8
Type: TF
Location: 17978 - 18991 (-)
Type: TF
Location: 17978 - 18991 (-)
Gene ID: A6_contig_1141_9
Type:
Location: 19178 - 19336 (+)
Type:
Location: 19178 - 19336 (+)
Gene ID: A6_contig_1141_10
Type: TC
Location: 19454 - 20527 (+)
Type: TC
Location: 19454 - 20527 (+)
Gene ID: A6_contig_1141_11
Type: TC
Location: 20540 - 21394 (+)
Type: TC
Location: 20540 - 21394 (+)
Gene ID: A6_contig_1141_12
Type: TC
Location: 21391 - 22227 (+)
Type: TC
Location: 21391 - 22227 (+)
Gene ID: A6_contig_1141_13
Type: TC
Location: 22267 - 22848 (+)
Type: TC
Location: 22267 - 22848 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A6_contig_1141_8 | vegan > omnivore | 4.98276 | 0.00138 |
| A6_contig_1141_8 | vegetarian > omnivore | 4.93370 | 0.00565 |
| A6_contig_1141_9 | vegan > omnivore | 2.94869 | 0.00138 |
| A6_contig_1141_9 | vegetarian > omnivore | 3.09400 | 0.00565 |
| A6_contig_1141_10 | vegan > omnivore | 2.14775 | 0.00138 |
| A6_contig_1141_10 | vegetarian > omnivore | 2.60349 | 0.00565 |
| A6_contig_1141_13 | vegan > omnivore | 1.45686 | 0.00138 |