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Cluster: A54.CMAG_2_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC A54_contig_360 A54_contig_360_555 624559 626154 + 3.D.10.1.2
TC A54_contig_360 A54_contig_360_556 626241 627656 + 2.A.25.1.4
NULL(UNKNOWN) A54_contig_360 A54_contig_360_557 627738 627932 + NULL(UNKNOWN)
[View Structural Homologs]
pfam A54_contig_360 A54_contig_360_558 627932 628189 + Acetyltransf_1 | Acetyltransf_CG
CAZyme A54_contig_360 A54_contig_360_559 628291 629325 - GH5_37
TF A54_contig_360 A54_contig_360_560 629481 630233 + HTH_AraC | HTH_AraC
TC A54_contig_360 A54_contig_360_561 630315 631679 - 2.A.40.7.6
STP A54_contig_360 A54_contig_360_562 631679 632230 - Pribosyltran
CAZyme A54_contig_360 A54_contig_360_563 632478 633941 - GT5
Gene ID: A54_contig_360_555
Type: TC
Location: 624559 - 626154 (+)
Gene ID: A54_contig_360_556
Type: TC
Location: 626241 - 627656 (+)
Gene ID: A54_contig_360_557
Type:
Location: 627738 - 627932 (+)
Gene ID: A54_contig_360_558
Type: pfam
Location: 627932 - 628189 (+)
Gene ID: A54_contig_360_559
Type: CAZyme
Location: 628291 - 629325 (-)
Gene ID: A54_contig_360_560
Type: TF
Location: 629481 - 630233 (+)
Gene ID: A54_contig_360_561
Type: TC
Location: 630315 - 631679 (-)
Gene ID: A54_contig_360_562
Type: STP
Location: 631679 - 632230 (-)
Gene ID: A54_contig_360_563
Type: CAZyme
Location: 632478 - 633941 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
A54_contig_360_555 vegan > omnivore 1.05990 0.04449

🧭 Explore Read Mapping of CGC

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