Cluster: A54.CMAG_2_CGC29
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: A54.CMAG_2
- CGC Family ID: CGCFAM_00011
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A54_contig_360 | A54_contig_360_2431 | 2605310 | 2605747 | - | 9.A.11.1.1 |
| TC | A54_contig_360 | A54_contig_360_2432 | 2605993 | 2608632 | + | 3.A.3.2.21 |
| STP | A54_contig_360 | A54_contig_360_2433 | 2608802 | 2610172 | - | PALP |
| TC | A54_contig_360 | A54_contig_360_2434 | 2610699 | 2611640 | - | 9.B.102.7.10 |
| CAZyme | A54_contig_360 | A54_contig_360_2435 | 2611624 | 2612655 | - | GT4 |
| CAZyme | A54_contig_360 | A54_contig_360_2436 | 2612603 | 2613568 | - | GT2 |
| NULL(UNKNOWN) | A54_contig_360 | A54_contig_360_2437 | 2613594 | 2615528 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A54_contig_360 | A54_contig_360_2438 | 2615525 | 2618083 | - | GT4 |
| pfam | A54_contig_360 | A54_contig_360_2439 | 2618080 | 2619279 | - | Methyltransf_21 |
| TC | A54_contig_360 | A54_contig_360_2440 | 2619276 | 2620565 | - | 3.A.1.103.4 |
| TC | A54_contig_360 | A54_contig_360_2441 | 2620565 | 2621341 | - | 3.A.1.103.4 |
Gene ID: A54_contig_360_2431
Type: TC
Location: 2605310 - 2605747 (-)
Type: TC
Location: 2605310 - 2605747 (-)
Gene ID: A54_contig_360_2432
Type: TC
Location: 2605993 - 2608632 (+)
Type: TC
Location: 2605993 - 2608632 (+)
Gene ID: A54_contig_360_2433
Type: STP
Location: 2608802 - 2610172 (-)
Type: STP
Location: 2608802 - 2610172 (-)
Gene ID: A54_contig_360_2434
Type: TC
Location: 2610699 - 2611640 (-)
Type: TC
Location: 2610699 - 2611640 (-)
Gene ID: A54_contig_360_2435
Type: CAZyme
Location: 2611624 - 2612655 (-)
Type: CAZyme
Location: 2611624 - 2612655 (-)
Gene ID: A54_contig_360_2436
Type: CAZyme
Location: 2612603 - 2613568 (-)
Type: CAZyme
Location: 2612603 - 2613568 (-)
Gene ID: A54_contig_360_2437
Type:
Location: 2613594 - 2615528 (-)
Type:
Location: 2613594 - 2615528 (-)
Gene ID: A54_contig_360_2438
Type: CAZyme
Location: 2615525 - 2618083 (-)
Type: CAZyme
Location: 2615525 - 2618083 (-)
Gene ID: A54_contig_360_2439
Type: pfam
Location: 2618080 - 2619279 (-)
Type: pfam
Location: 2618080 - 2619279 (-)
Gene ID: A54_contig_360_2440
Type: TC
Location: 2619276 - 2620565 (-)
Type: TC
Location: 2619276 - 2620565 (-)
Gene ID: A54_contig_360_2441
Type: TC
Location: 2620565 - 2621341 (-)
Type: TC
Location: 2620565 - 2621341 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp000437255
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.