Cluster: A54.CMAG_2_CGC27
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 3
- Substrate:
- Genome ID: A54.CMAG_2
- CGC Family ID: CGCFAM_00055
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A54_contig_360 | A54_contig_360_2351 | 2519342 | 2520793 | - | 3.D.10.1.6 |
| NULL(UNKNOWN) | A54_contig_360 | A54_contig_360_2352 | 2521156 | 2521302 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A54_contig_360 | A54_contig_360_2353 | 2521372 | 2523174 | - | GT2 |
| pfam | A54_contig_360 | A54_contig_360_2354 | 2523565 | 2524338 | + | ABC2_membrane |
| TC | A54_contig_360 | A54_contig_360_2355 | 2524351 | 2525118 | + | 3.A.1.103.5 |
| pfam | A54_contig_360 | A54_contig_360_2356 | 2525118 | 2526155 | + | DUF6270 |
| STP | A54_contig_360 | A54_contig_360_2357 | 2526161 | 2528473 | + | Fer4 |
| CAZyme | A54_contig_360 | A54_contig_360_2358 | 2528506 | 2529615 | + | GT2 |
| CAZyme | A54_contig_360 | A54_contig_360_2359 | 2529648 | 2530943 | + | GT2 |
Gene ID: A54_contig_360_2351
Type: TC
Location: 2519342 - 2520793 (-)
Type: TC
Location: 2519342 - 2520793 (-)
Gene ID: A54_contig_360_2352
Type:
Location: 2521156 - 2521302 (+)
Type:
Location: 2521156 - 2521302 (+)
Gene ID: A54_contig_360_2353
Type: CAZyme
Location: 2521372 - 2523174 (-)
Type: CAZyme
Location: 2521372 - 2523174 (-)
Gene ID: A54_contig_360_2354
Type: pfam
Location: 2523565 - 2524338 (+)
Type: pfam
Location: 2523565 - 2524338 (+)
Gene ID: A54_contig_360_2355
Type: TC
Location: 2524351 - 2525118 (+)
Type: TC
Location: 2524351 - 2525118 (+)
Gene ID: A54_contig_360_2356
Type: pfam
Location: 2525118 - 2526155 (+)
Type: pfam
Location: 2525118 - 2526155 (+)
Gene ID: A54_contig_360_2357
Type: STP
Location: 2526161 - 2528473 (+)
Type: STP
Location: 2526161 - 2528473 (+)
Gene ID: A54_contig_360_2358
Type: CAZyme
Location: 2528506 - 2529615 (+)
Type: CAZyme
Location: 2528506 - 2529615 (+)
Gene ID: A54_contig_360_2359
Type: CAZyme
Location: 2529648 - 2530943 (+)
Type: CAZyme
Location: 2529648 - 2530943 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp000437255
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.