Cluster: A54.CMAG_2_CGC20
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: A54.CMAG_2
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A54_contig_360 | A54_contig_360_1835 | 1955000 | 1956961 | - | CBM35 | GH26 |
| pfam | A54_contig_360 | A54_contig_360_1836 | 1957103 | 1959418 | - | TPR_6 | TPR_7 | TPR_7 | TPR_8 | DUF4037 | TPR_10 | TPR_10 | TPR_12 | TPR_12 | TPR_12 | DUF4125 |
| TC | A54_contig_360 | A54_contig_360_1837 | 1959432 | 1960610 | - | 2.A.4.7.4 |
| CAZyme | A54_contig_360 | A54_contig_360_1838 | 1960865 | 1962220 | + | GH1 |
| NULL(UNKNOWN) | A54_contig_360 | A54_contig_360_1839 | 1962442 | 1963626 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A54_contig_360 | A54_contig_360_1840 | 1963650 | 1964249 | + | 2.A.115.2.14 |
Gene ID: A54_contig_360_1835
Type: CAZyme
Location: 1955000 - 1956961 (-)
Type: CAZyme
Location: 1955000 - 1956961 (-)
Gene ID: A54_contig_360_1836
Type: pfam
Location: 1957103 - 1959418 (-)
Type: pfam
Location: 1957103 - 1959418 (-)
Gene ID: A54_contig_360_1837
Type: TC
Location: 1959432 - 1960610 (-)
Type: TC
Location: 1959432 - 1960610 (-)
Gene ID: A54_contig_360_1838
Type: CAZyme
Location: 1960865 - 1962220 (+)
Type: CAZyme
Location: 1960865 - 1962220 (+)
Gene ID: A54_contig_360_1839
Type:
Location: 1962442 - 1963626 (+)
Type:
Location: 1962442 - 1963626 (+)
Gene ID: A54_contig_360_1840
Type: TC
Location: 1963650 - 1964249 (+)
Type: TC
Location: 1963650 - 1964249 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp000437255
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.