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Cluster: A54.CMAG_2_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC A54_contig_360 A54_contig_360_53 61921 63327 + 9.B.18.1.3
pfam A54_contig_360 A54_contig_360_54 63329 64408 + NTP_transferase | NTP_transf_3 | ManC_GMP_beta-helix
pfam A54_contig_360 A54_contig_360_55 64463 65506 + Epimerase | RmlD_sub_bind | GDP_Man_Dehyd
CAZyme A54_contig_360 A54_contig_360_56 65603 66784 + GT4
NULL(UNKNOWN) A54_contig_360 A54_contig_360_57 66781 67083 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme A54_contig_360 A54_contig_360_58 67117 68277 + GT4
pfam A54_contig_360 A54_contig_360_59 68274 69254 + 3Beta_HSD | Epimerase | Polysacc_synt_2 | GDP_Man_Dehyd
NULL(UNKNOWN) A54_contig_360 A54_contig_360_60 69247 69666 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme A54_contig_360 A54_contig_360_61 69834 71687 + GH5_4
Gene ID: A54_contig_360_53
Type: TC
Location: 61921 - 63327 (+)
Gene ID: A54_contig_360_54
Type: pfam
Location: 63329 - 64408 (+)
Gene ID: A54_contig_360_55
Type: pfam
Location: 64463 - 65506 (+)
Gene ID: A54_contig_360_56
Type: CAZyme
Location: 65603 - 66784 (+)
Gene ID: A54_contig_360_57
Type:
Location: 66781 - 67083 (+)
Gene ID: A54_contig_360_58
Type: CAZyme
Location: 67117 - 68277 (+)
Gene ID: A54_contig_360_59
Type: pfam
Location: 68274 - 69254 (+)
Gene ID: A54_contig_360_60
Type:
Location: 69247 - 69666 (+)
Gene ID: A54_contig_360_61
Type: CAZyme
Location: 69834 - 71687 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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