Cluster: A54.CMAG_2_CGC15
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: A54.CMAG_2
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A54_contig_360 | A54_contig_360_1481 | 1502907 | 1505006 | - | 3.A.3.32.6 |
| NULL(UNKNOWN) | A54_contig_360 | A54_contig_360_1482 | 1505006 | 1505281 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | A54_contig_360 | A54_contig_360_1483 | 1505614 | 1506063 | - | HTH_AraC | HTH_AraC |
| CAZyme | A54_contig_360 | A54_contig_360_1484 | 1506664 | 1508100 | + | GH8 |
| TC | A54_contig_360 | A54_contig_360_1485 | 1508351 | 1509133 | + | 3.A.1.3.15 |
| TC | A54_contig_360 | A54_contig_360_1486 | 1509149 | 1509841 | + | 3.A.1.3.14 |
| TC | A54_contig_360 | A54_contig_360_1487 | 1509828 | 1510556 | + | 3.A.1.3.25 |
| CAZyme | A54_contig_360 | A54_contig_360_1488 | 1510692 | 1513259 | - | CBM76 | GH44 |
| NULL(UNKNOWN) | A54_contig_360 | A54_contig_360_1489 | 1513526 | 1513816 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A54_contig_360 | A54_contig_360_1490 | 1513916 | 1516036 | - | 4.A.1.1.9 |
| NULL(UNKNOWN) | A54_contig_360 | A54_contig_360_1491 | 1516164 | 1516343 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | A54_contig_360 | A54_contig_360_1492 | 1516475 | 1517899 | - | Rhodanese |
| TC | A54_contig_360 | A54_contig_360_1493 | 1517896 | 1518717 | - | 3.A.25.2.1 |
Gene ID: A54_contig_360_1481
Type: TC
Location: 1502907 - 1505006 (-)
Type: TC
Location: 1502907 - 1505006 (-)
Gene ID: A54_contig_360_1482
Type:
Location: 1505006 - 1505281 (-)
Type:
Location: 1505006 - 1505281 (-)
Gene ID: A54_contig_360_1483
Type: TF
Location: 1505614 - 1506063 (-)
Type: TF
Location: 1505614 - 1506063 (-)
Gene ID: A54_contig_360_1484
Type: CAZyme
Location: 1506664 - 1508100 (+)
Type: CAZyme
Location: 1506664 - 1508100 (+)
Gene ID: A54_contig_360_1485
Type: TC
Location: 1508351 - 1509133 (+)
Type: TC
Location: 1508351 - 1509133 (+)
Gene ID: A54_contig_360_1486
Type: TC
Location: 1509149 - 1509841 (+)
Type: TC
Location: 1509149 - 1509841 (+)
Gene ID: A54_contig_360_1487
Type: TC
Location: 1509828 - 1510556 (+)
Type: TC
Location: 1509828 - 1510556 (+)
Gene ID: A54_contig_360_1488
Type: CAZyme
Location: 1510692 - 1513259 (-)
Type: CAZyme
Location: 1510692 - 1513259 (-)
Gene ID: A54_contig_360_1489
Type:
Location: 1513526 - 1513816 (+)
Type:
Location: 1513526 - 1513816 (+)
Gene ID: A54_contig_360_1490
Type: TC
Location: 1513916 - 1516036 (-)
Type: TC
Location: 1513916 - 1516036 (-)
Gene ID: A54_contig_360_1491
Type:
Location: 1516164 - 1516343 (-)
Type:
Location: 1516164 - 1516343 (-)
Gene ID: A54_contig_360_1492
Type: STP
Location: 1516475 - 1517899 (-)
Type: STP
Location: 1516475 - 1517899 (-)
Gene ID: A54_contig_360_1493
Type: TC
Location: 1517896 - 1518717 (-)
Type: TC
Location: 1517896 - 1518717 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp000437255
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.