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Cluster: A54.CMAG_2_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC A54_contig_360 A54_contig_360_20 23672 24466 - 3.A.1.17.3
TC A54_contig_360 A54_contig_360_21 24481 25284 - 3.A.1.16.1
pfam A54_contig_360 A54_contig_360_22 25298 26053 - BPD_transp_1
TC A54_contig_360 A54_contig_360_23 26133 26915 - 3.A.1.16.1
peptidase A54_contig_360 A54_contig_360_24 27327 28925 + M38.UNW
CAZyme A54_contig_360 A54_contig_360_25 29164 31656 + CBM35 | CBM78 | GH26
pfam A54_contig_360 A54_contig_360_26 31793 32458 + Hydrolase | HAD_2
pfam A54_contig_360 A54_contig_360_27 32569 33000 - ABC_trans_CmpB
CAZyme A54_contig_360 A54_contig_360_28 33103 34725 + GH77
CAZyme A54_contig_360 A54_contig_360_29 34718 37078 + GT35
Gene ID: A54_contig_360_20
Type: TC
Location: 23672 - 24466 (-)
Gene ID: A54_contig_360_21
Type: TC
Location: 24481 - 25284 (-)
Gene ID: A54_contig_360_22
Type: pfam
Location: 25298 - 26053 (-)
Gene ID: A54_contig_360_23
Type: TC
Location: 26133 - 26915 (-)
Gene ID: A54_contig_360_24
Type: peptidase
Location: 27327 - 28925 (+)
Gene ID: A54_contig_360_25
Type: CAZyme
Location: 29164 - 31656 (+)
Gene ID: A54_contig_360_26
Type: pfam
Location: 31793 - 32458 (+)
Gene ID: A54_contig_360_27
Type: pfam
Location: 32569 - 33000 (-)
Gene ID: A54_contig_360_28
Type: CAZyme
Location: 33103 - 34725 (+)
Gene ID: A54_contig_360_29
Type: CAZyme
Location: 34718 - 37078 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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