Cluster: A49.bin_13_CGC37
🧬 Cluster Details
- Gene Count: 29
- CAZyme Count: 8
- Substrate:
- Genome ID: A49.bin_13
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A49_contig_140 | A49_contig_140_2310 | 2714806 | 2717331 | + | GH31_2 |
| TC | A49_contig_140 | A49_contig_140_2311 | 2717512 | 2718549 | + | 2.A.56.1.2 |
| pfam | A49_contig_140 | A49_contig_140_2312 | 2718553 | 2719062 | + | DctQ |
| TC | A49_contig_140 | A49_contig_140_2313 | 2719059 | 2720360 | + | 2.A.56.1.5 |
| TF | A49_contig_140 | A49_contig_140_2314 | 2720712 | 2721470 | + | LytTR |
| pfam | A49_contig_140 | A49_contig_140_2315 | 2721458 | 2722735 | + | HATPase_c_5 |
| CAZyme | A49_contig_140 | A49_contig_140_2316 | 2722954 | 2725920 | + | GH3 |
| pfam | A49_contig_140 | A49_contig_140_2317 | 2725936 | 2727552 | + | Big_3 |
| CAZyme | A49_contig_140 | A49_contig_140_2318 | 2727837 | 2730257 | + | GH3 |
| pfam | A49_contig_140 | A49_contig_140_2319 | 2730271 | 2730816 | + | GtrA_DPMS_TM |
| CAZyme | A49_contig_140 | A49_contig_140_2320 | 2731287 | 2733110 | - | GH13_4 |
| STP | A49_contig_140 | A49_contig_140_2321 | 2733114 | 2734046 | - | PfkB |
| NULL(UNKNOWN) | A49_contig_140 | A49_contig_140_2322 | 2734094 | 2734732 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A49_contig_140 | A49_contig_140_2323 | 2734695 | 2735339 | - | 9.B.28.1.3 |
| TF | A49_contig_140 | A49_contig_140_2324 | 2735350 | 2736402 | - | LacI |
| TC | A49_contig_140 | A49_contig_140_2325 | 2736772 | 2737719 | + | 3.A.1.1.10 |
| TC | A49_contig_140 | A49_contig_140_2326 | 2737733 | 2738635 | + | 3.A.1.1.10 |
| STP | A49_contig_140 | A49_contig_140_2327 | 2738696 | 2740369 | + | SBP_bac_1 |
| CAZyme | A49_contig_140 | A49_contig_140_2328 | 2740389 | 2741864 | + | GH32 |
| STP | A49_contig_140 | A49_contig_140_2329 | 2742458 | 2745301 | - | HATPase_c | HisKA | Response_reg | SBP_bac_3 | SBP_bac_3 |
| NULL(UNKNOWN) | A49_contig_140 | A49_contig_140_2330 | 2745778 | 2745942 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A49_contig_140 | A49_contig_140_2331 | 2746368 | 2748767 | - | GH2 |
| CAZyme | A49_contig_140 | A49_contig_140_2332 | 2748781 | 2749521 | - | CE4 |
| pfam | A49_contig_140 | A49_contig_140_2333 | 2749524 | 2750648 | - | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | A49_contig_140 | A49_contig_140_2334 | 2750661 | 2752124 | - | GH43_35 |
| TF | A49_contig_140 | A49_contig_140_2335 | 2752212 | 2753234 | + | HTH_AraC |
| pfam | A49_contig_140 | A49_contig_140_2336 | 2753238 | 2754710 | - | MFS_2 |
| TC | A49_contig_140 | A49_contig_140_2337 | 2755874 | 2757601 | - | 3.A.1.21.1 |
| TC | A49_contig_140 | A49_contig_140_2338 | 2757604 | 2759361 | - | 3.A.1.21.1 |
Gene ID: A49_contig_140_2310
Type: CAZyme
Location: 2714806 - 2717331 (+)
Type: CAZyme
Location: 2714806 - 2717331 (+)
Gene ID: A49_contig_140_2311
Type: TC
Location: 2717512 - 2718549 (+)
Type: TC
Location: 2717512 - 2718549 (+)
Gene ID: A49_contig_140_2312
Type: pfam
Location: 2718553 - 2719062 (+)
Type: pfam
Location: 2718553 - 2719062 (+)
Gene ID: A49_contig_140_2313
Type: TC
Location: 2719059 - 2720360 (+)
Type: TC
Location: 2719059 - 2720360 (+)
Gene ID: A49_contig_140_2314
Type: TF
Location: 2720712 - 2721470 (+)
Type: TF
Location: 2720712 - 2721470 (+)
Gene ID: A49_contig_140_2315
Type: pfam
Location: 2721458 - 2722735 (+)
Type: pfam
Location: 2721458 - 2722735 (+)
Gene ID: A49_contig_140_2316
Type: CAZyme
Location: 2722954 - 2725920 (+)
Type: CAZyme
Location: 2722954 - 2725920 (+)
Gene ID: A49_contig_140_2317
Type: pfam
Location: 2725936 - 2727552 (+)
Type: pfam
Location: 2725936 - 2727552 (+)
Gene ID: A49_contig_140_2318
Type: CAZyme
Location: 2727837 - 2730257 (+)
Type: CAZyme
Location: 2727837 - 2730257 (+)
Gene ID: A49_contig_140_2319
Type: pfam
Location: 2730271 - 2730816 (+)
Type: pfam
Location: 2730271 - 2730816 (+)
Gene ID: A49_contig_140_2320
Type: CAZyme
Location: 2731287 - 2733110 (-)
Type: CAZyme
Location: 2731287 - 2733110 (-)
Gene ID: A49_contig_140_2321
Type: STP
Location: 2733114 - 2734046 (-)
Type: STP
Location: 2733114 - 2734046 (-)
Gene ID: A49_contig_140_2322
Type:
Location: 2734094 - 2734732 (-)
Type:
Location: 2734094 - 2734732 (-)
Gene ID: A49_contig_140_2323
Type: TC
Location: 2734695 - 2735339 (-)
Type: TC
Location: 2734695 - 2735339 (-)
Gene ID: A49_contig_140_2324
Type: TF
Location: 2735350 - 2736402 (-)
Type: TF
Location: 2735350 - 2736402 (-)
Gene ID: A49_contig_140_2325
Type: TC
Location: 2736772 - 2737719 (+)
Type: TC
Location: 2736772 - 2737719 (+)
Gene ID: A49_contig_140_2326
Type: TC
Location: 2737733 - 2738635 (+)
Type: TC
Location: 2737733 - 2738635 (+)
Gene ID: A49_contig_140_2327
Type: STP
Location: 2738696 - 2740369 (+)
Type: STP
Location: 2738696 - 2740369 (+)
Gene ID: A49_contig_140_2328
Type: CAZyme
Location: 2740389 - 2741864 (+)
Type: CAZyme
Location: 2740389 - 2741864 (+)
Gene ID: A49_contig_140_2329
Type: STP
Location: 2742458 - 2745301 (-)
Type: STP
Location: 2742458 - 2745301 (-)
Gene ID: A49_contig_140_2330
Type:
Location: 2745778 - 2745942 (-)
Type:
Location: 2745778 - 2745942 (-)
Gene ID: A49_contig_140_2331
Type: CAZyme
Location: 2746368 - 2748767 (-)
Type: CAZyme
Location: 2746368 - 2748767 (-)
Gene ID: A49_contig_140_2332
Type: CAZyme
Location: 2748781 - 2749521 (-)
Type: CAZyme
Location: 2748781 - 2749521 (-)
Gene ID: A49_contig_140_2333
Type: pfam
Location: 2749524 - 2750648 (-)
Type: pfam
Location: 2749524 - 2750648 (-)
Gene ID: A49_contig_140_2334
Type: CAZyme
Location: 2750661 - 2752124 (-)
Type: CAZyme
Location: 2750661 - 2752124 (-)
Gene ID: A49_contig_140_2335
Type: TF
Location: 2752212 - 2753234 (+)
Type: TF
Location: 2752212 - 2753234 (+)
Gene ID: A49_contig_140_2336
Type: pfam
Location: 2753238 - 2754710 (-)
Type: pfam
Location: 2753238 - 2754710 (-)
Gene ID: A49_contig_140_2337
Type: TC
Location: 2755874 - 2757601 (-)
Type: TC
Location: 2755874 - 2757601 (-)
Gene ID: A49_contig_140_2338
Type: TC
Location: 2757604 - 2759361 (-)
Type: TC
Location: 2757604 - 2759361 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.