Cluster: A49.bin_13_CGC34
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate:
- Genome ID: A49.bin_13
- CGC Family ID: CGCFAM_01928
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A49_contig_140 | A49_contig_140_2083 | 2444081 | 2445808 | + | 3.A.7.13.1 |
| STP | A49_contig_140 | A49_contig_140_2084 | 2445805 | 2447289 | + | Peptidase_M23 |
| TC | A49_contig_140 | A49_contig_140_2085 | 2447893 | 2449638 | + | 9.B.33.1.1 |
| TF | A49_contig_140 | A49_contig_140_2086 | 2449613 | 2451094 | + | HTH_AraC |
| TC | A49_contig_140 | A49_contig_140_2087 | 2451336 | 2452700 | + | 3.A.1.1.11 |
| TC | A49_contig_140 | A49_contig_140_2088 | 2452781 | 2453695 | + | 3.A.1.1.11 |
| TC | A49_contig_140 | A49_contig_140_2089 | 2453708 | 2454562 | + | 3.A.1.1.11 |
| CAZyme | A49_contig_140 | A49_contig_140_2090 | 2454991 | 2456961 | + | GH115 |
| NULL(UNKNOWN) | A49_contig_140 | A49_contig_140_2091 | 2456987 | 2457568 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A49_contig_140 | A49_contig_140_2092 | 2457568 | 2458656 | + | CE2 |
Gene ID: A49_contig_140_2083
Type: TC
Location: 2444081 - 2445808 (+)
Type: TC
Location: 2444081 - 2445808 (+)
Gene ID: A49_contig_140_2084
Type: STP
Location: 2445805 - 2447289 (+)
Type: STP
Location: 2445805 - 2447289 (+)
Gene ID: A49_contig_140_2085
Type: TC
Location: 2447893 - 2449638 (+)
Type: TC
Location: 2447893 - 2449638 (+)
Gene ID: A49_contig_140_2086
Type: TF
Location: 2449613 - 2451094 (+)
Type: TF
Location: 2449613 - 2451094 (+)
Gene ID: A49_contig_140_2087
Type: TC
Location: 2451336 - 2452700 (+)
Type: TC
Location: 2451336 - 2452700 (+)
Gene ID: A49_contig_140_2088
Type: TC
Location: 2452781 - 2453695 (+)
Type: TC
Location: 2452781 - 2453695 (+)
Gene ID: A49_contig_140_2089
Type: TC
Location: 2453708 - 2454562 (+)
Type: TC
Location: 2453708 - 2454562 (+)
Gene ID: A49_contig_140_2090
Type: CAZyme
Location: 2454991 - 2456961 (+)
Type: CAZyme
Location: 2454991 - 2456961 (+)
Gene ID: A49_contig_140_2091
Type:
Location: 2456987 - 2457568 (+)
Type:
Location: 2456987 - 2457568 (+)
Gene ID: A49_contig_140_2092
Type: CAZyme
Location: 2457568 - 2458656 (+)
Type: CAZyme
Location: 2457568 - 2458656 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A49_contig_140_2083 | vegan > omnivore | 1.69888 | 0.00699 |
| A49_contig_140_2084 | vegan > omnivore | 1.55546 | 0.00699 |
| A49_contig_140_2084 | vegetarian > omnivore | 1.08207 | 0.00567 |