Cluster: A49.bin_13_CGC28
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: A49.bin_13
- CGC Family ID: CGCFAM_04432
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A49_contig_140 | A49_contig_140_1845 | 2152389 | 2153324 | + | 3.A.1.1.7 |
| TC | A49_contig_140 | A49_contig_140_1846 | 2153337 | 2154182 | + | 3.A.1.1.44 |
| pfam | A49_contig_140 | A49_contig_140_1847 | 2154222 | 2155610 | + | SBP_bac_8 |
| CAZyme | A49_contig_140 | A49_contig_140_1848 | 2155692 | 2157704 | + | PL11 |
| CAZyme | A49_contig_140 | A49_contig_140_1849 | 2157730 | 2158947 | + | GH105 |
Gene ID: A49_contig_140_1845
Type: TC
Location: 2152389 - 2153324 (+)
Type: TC
Location: 2152389 - 2153324 (+)
Gene ID: A49_contig_140_1846
Type: TC
Location: 2153337 - 2154182 (+)
Type: TC
Location: 2153337 - 2154182 (+)
Gene ID: A49_contig_140_1847
Type: pfam
Location: 2154222 - 2155610 (+)
Type: pfam
Location: 2154222 - 2155610 (+)
Gene ID: A49_contig_140_1848
Type: CAZyme
Location: 2155692 - 2157704 (+)
Type: CAZyme
Location: 2155692 - 2157704 (+)
Gene ID: A49_contig_140_1849
Type: CAZyme
Location: 2157730 - 2158947 (+)
Type: CAZyme
Location: 2157730 - 2158947 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A49_contig_140_1847 | vegan > omnivore | 1.18603 | 0.00699 |
| A49_contig_140_1848 | vegan > omnivore | 1.22372 | 0.00699 |