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Cluster: A49.bin_13_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC A49_contig_140 A49_contig_140_1814 2120297 2121658 + 2.A.66.1.22
TC A49_contig_140 A49_contig_140_1815 2121676 2122284 + 9.B.28.1.2
TF A49_contig_140 A49_contig_140_1816 2122309 2123223 - HTH_AraC | HTH_AraC
STP A49_contig_140 A49_contig_140_1817 2123525 2124889 + SBP_bac_1
TC A49_contig_140 A49_contig_140_1818 2124983 2125897 + 3.A.1.1.11
TC A49_contig_140 A49_contig_140_1819 2125918 2126760 + 3.A.1.1.11
CAZyme A49_contig_140 A49_contig_140_1820 2126773 2128335 + CBM91 | GH43_11
CAZyme A49_contig_140 A49_contig_140_1821 2128341 2129783 + GH63
pfam A49_contig_140 A49_contig_140_1822 2129833 2130621 + Polysacc_deac_1
CAZyme A49_contig_140 A49_contig_140_1823 2130657 2131991 + GH28
CAZyme A49_contig_140 A49_contig_140_1824 2132050 2134188 + GH3
Gene ID: A49_contig_140_1814
Type: TC
Location: 2120297 - 2121658 (+)
Gene ID: A49_contig_140_1815
Type: TC
Location: 2121676 - 2122284 (+)
Gene ID: A49_contig_140_1816
Type: TF
Location: 2122309 - 2123223 (-)
Gene ID: A49_contig_140_1817
Type: STP
Location: 2123525 - 2124889 (+)
Gene ID: A49_contig_140_1818
Type: TC
Location: 2124983 - 2125897 (+)
Gene ID: A49_contig_140_1819
Type: TC
Location: 2125918 - 2126760 (+)
Gene ID: A49_contig_140_1820
Type: CAZyme
Location: 2126773 - 2128335 (+)
Gene ID: A49_contig_140_1821
Type: CAZyme
Location: 2128341 - 2129783 (+)
Gene ID: A49_contig_140_1822
Type: pfam
Location: 2129833 - 2130621 (+)
Gene ID: A49_contig_140_1823
Type: CAZyme
Location: 2130657 - 2131991 (+)
Gene ID: A49_contig_140_1824
Type: CAZyme
Location: 2132050 - 2134188 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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