Cluster: A49.bin_13_CGC26
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 1
- Substrate:
- Genome ID: A49.bin_13
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A49_contig_140 | A49_contig_140_1682 | 1948997 | 1950718 | - | 3.A.1.5.1 |
| TC | A49_contig_140 | A49_contig_140_1683 | 1951195 | 1952928 | - | 3.A.1.5.22 |
| TC | A49_contig_140 | A49_contig_140_1684 | 1953256 | 1954245 | - | 3.A.1.5.20 |
| TC | A49_contig_140 | A49_contig_140_1685 | 1954245 | 1955243 | - | 3.A.1.5.2 |
| TC | A49_contig_140 | A49_contig_140_1686 | 1955263 | 1956312 | - | 3.A.1.5.2 |
| TC | A49_contig_140 | A49_contig_140_1687 | 1956327 | 1957244 | - | 3.A.1.5.2 |
| pfam | A49_contig_140 | A49_contig_140_1688 | 1958338 | 1959036 | - | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | A49_contig_140 | A49_contig_140_1689 | 1959083 | 1959586 | - | GH43_35 |
| STP | A49_contig_140 | A49_contig_140_1690 | 1959848 | 1960957 | - | Fer4 |
| TC | A49_contig_140 | A49_contig_140_1691 | 1961160 | 1963016 | - | 3.A.1.135.5 |
| TC | A49_contig_140 | A49_contig_140_1692 | 1962994 | 1964745 | - | 3.A.1.135.5 |
| pfam | A49_contig_140 | A49_contig_140_1693 | 1965385 | 1966284 | - | EamA | EamA |
| NULL(UNKNOWN) | A49_contig_140 | A49_contig_140_1694 | 1966376 | 1966999 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A49_contig_140 | A49_contig_140_1695 | 1967274 | 1967903 | - | 2.A.115.1.2 |
Gene ID: A49_contig_140_1682
Type: TC
Location: 1948997 - 1950718 (-)
Type: TC
Location: 1948997 - 1950718 (-)
Gene ID: A49_contig_140_1683
Type: TC
Location: 1951195 - 1952928 (-)
Type: TC
Location: 1951195 - 1952928 (-)
Gene ID: A49_contig_140_1684
Type: TC
Location: 1953256 - 1954245 (-)
Type: TC
Location: 1953256 - 1954245 (-)
Gene ID: A49_contig_140_1685
Type: TC
Location: 1954245 - 1955243 (-)
Type: TC
Location: 1954245 - 1955243 (-)
Gene ID: A49_contig_140_1686
Type: TC
Location: 1955263 - 1956312 (-)
Type: TC
Location: 1955263 - 1956312 (-)
Gene ID: A49_contig_140_1687
Type: TC
Location: 1956327 - 1957244 (-)
Type: TC
Location: 1956327 - 1957244 (-)
Gene ID: A49_contig_140_1688
Type: pfam
Location: 1958338 - 1959036 (-)
Type: pfam
Location: 1958338 - 1959036 (-)
Gene ID: A49_contig_140_1689
Type: CAZyme
Location: 1959083 - 1959586 (-)
Type: CAZyme
Location: 1959083 - 1959586 (-)
Gene ID: A49_contig_140_1690
Type: STP
Location: 1959848 - 1960957 (-)
Type: STP
Location: 1959848 - 1960957 (-)
Gene ID: A49_contig_140_1691
Type: TC
Location: 1961160 - 1963016 (-)
Type: TC
Location: 1961160 - 1963016 (-)
Gene ID: A49_contig_140_1692
Type: TC
Location: 1962994 - 1964745 (-)
Type: TC
Location: 1962994 - 1964745 (-)
Gene ID: A49_contig_140_1693
Type: pfam
Location: 1965385 - 1966284 (-)
Type: pfam
Location: 1965385 - 1966284 (-)
Gene ID: A49_contig_140_1694
Type:
Location: 1966376 - 1966999 (-)
Type:
Location: 1966376 - 1966999 (-)
Gene ID: A49_contig_140_1695
Type: TC
Location: 1967274 - 1967903 (-)
Type: TC
Location: 1967274 - 1967903 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.