Cluster: A49.CMAG_4_CGC7
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: A49.CMAG_4
- CGC Family ID: CGCFAM_04445
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A49_contig_1089 | A49_contig_1089_634 | 696264 | 697322 | - | 3.A.1.6.3 |
| TC | A49_contig_1089 | A49_contig_1089_635 | 697322 | 698146 | - | 3.A.1.6.1 |
| TC | A49_contig_1089 | A49_contig_1089_636 | 698149 | 698982 | - | 3.A.1.6.1 |
| TC | A49_contig_1089 | A49_contig_1089_637 | 698992 | 699999 | - | 3.A.1.6.1 |
| pfam | A49_contig_1089 | A49_contig_1089_638 | 700308 | 701864 | + | SipL | SipL |
| pfam | A49_contig_1089 | A49_contig_1089_639 | 701883 | 703358 | + | SpoIVA_ATPase | SpoIVA_middle | SpoIVA_C |
| TC | A49_contig_1089 | A49_contig_1089_640 | 703797 | 704309 | - | 4.A.1.1.12 |
| NULL(UNKNOWN) | A49_contig_1089 | A49_contig_1089_641 | 704316 | 704471 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A49_contig_1089 | A49_contig_1089_642 | 704487 | 705938 | - | GH32 |
| TC | A49_contig_1089 | A49_contig_1089_643 | 705955 | 707370 | - | 4.A.1.2.9 |
Gene ID: A49_contig_1089_634
Type: TC
Location: 696264 - 697322 (-)
Type: TC
Location: 696264 - 697322 (-)
Gene ID: A49_contig_1089_635
Type: TC
Location: 697322 - 698146 (-)
Type: TC
Location: 697322 - 698146 (-)
Gene ID: A49_contig_1089_636
Type: TC
Location: 698149 - 698982 (-)
Type: TC
Location: 698149 - 698982 (-)
Gene ID: A49_contig_1089_637
Type: TC
Location: 698992 - 699999 (-)
Type: TC
Location: 698992 - 699999 (-)
Gene ID: A49_contig_1089_638
Type: pfam
Location: 700308 - 701864 (+)
Type: pfam
Location: 700308 - 701864 (+)
Gene ID: A49_contig_1089_639
Type: pfam
Location: 701883 - 703358 (+)
Type: pfam
Location: 701883 - 703358 (+)
Gene ID: A49_contig_1089_640
Type: TC
Location: 703797 - 704309 (-)
Type: TC
Location: 703797 - 704309 (-)
Gene ID: A49_contig_1089_641
Type:
Location: 704316 - 704471 (-)
Type:
Location: 704316 - 704471 (-)
Gene ID: A49_contig_1089_642
Type: CAZyme
Location: 704487 - 705938 (-)
Type: CAZyme
Location: 704487 - 705938 (-)
Gene ID: A49_contig_1089_643
Type: TC
Location: 705955 - 707370 (-)
Type: TC
Location: 705955 - 707370 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C callidus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A49_contig_1089_635 | vegan > omnivore | 1.37561 | 0.00068 |
| A49_contig_1089_636 | vegan > omnivore | 1.19182 | 0.00068 |
| A49_contig_1089_637 | vegan > omnivore | 1.20600 | 0.00068 |
| A49_contig_1089_637 | vegetarian > omnivore | 1.21716 | 0.00341 |
| A49_contig_1089_638 | vegan > omnivore | 1.88189 | 0.00068 |
| A49_contig_1089_638 | vegetarian > omnivore | 1.54907 | 0.00341 |
| A49_contig_1089_640 | vegan > omnivore | 2.51052 | 0.00068 |
| A49_contig_1089_640 | vegetarian > omnivore | 1.95795 | 0.00341 |
| A49_contig_1089_641 | vegan > omnivore | 2.75964 | 0.00068 |
| A49_contig_1089_641 | vegetarian > omnivore | 2.57387 | 0.00341 |
| A49_contig_1089_642 | vegan > omnivore | 2.31437 | 0.00068 |
| A49_contig_1089_642 | vegetarian > omnivore | 2.14988 | 0.00341 |