Cluster: A49.CMAG_4_CGC6
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: A49.CMAG_4
- CGC Family ID: CGCFAM_04264
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A49_contig_1089 | A49_contig_1089_499 | 549510 | 551360 | + | GH5_1 |
| pfam | A49_contig_1089 | A49_contig_1089_500 | 551373 | 551852 | + | dCMP_cyt_deam_1 | MafB19-deam |
| pfam | A49_contig_1089 | A49_contig_1089_501 | 552173 | 552892 | + | Methyltransf_4 |
| CAZyme | A49_contig_1089 | A49_contig_1089_502 | 552895 | 556047 | + | GH59 |
| TF | A49_contig_1089 | A49_contig_1089_503 | 556013 | 557434 | + | GntR |
| NULL(UNKNOWN) | A49_contig_1089 | A49_contig_1089_504 | 557737 | 557859 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A49_contig_1089 | A49_contig_1089_505 | 558043 | 560313 | + | 3.A.9.1.2 |
Gene ID: A49_contig_1089_499
Type: CAZyme
Location: 549510 - 551360 (+)
Type: CAZyme
Location: 549510 - 551360 (+)
Gene ID: A49_contig_1089_500
Type: pfam
Location: 551373 - 551852 (+)
Type: pfam
Location: 551373 - 551852 (+)
Gene ID: A49_contig_1089_501
Type: pfam
Location: 552173 - 552892 (+)
Type: pfam
Location: 552173 - 552892 (+)
Gene ID: A49_contig_1089_502
Type: CAZyme
Location: 552895 - 556047 (+)
Type: CAZyme
Location: 552895 - 556047 (+)
Gene ID: A49_contig_1089_503
Type: TF
Location: 556013 - 557434 (+)
Type: TF
Location: 556013 - 557434 (+)
Gene ID: A49_contig_1089_504
Type:
Location: 557737 - 557859 (-)
Type:
Location: 557737 - 557859 (-)
Gene ID: A49_contig_1089_505
Type: TC
Location: 558043 - 560313 (+)
Type: TC
Location: 558043 - 560313 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C callidus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A49_contig_1089_502 | vegan > omnivore | 1.59827 | 0.00068 |
| A49_contig_1089_502 | vegetarian > omnivore | 1.37829 | 0.00341 |
| A49_contig_1089_503 | vegan > omnivore | 4.51585 | 0.00068 |
| A49_contig_1089_503 | vegetarian > omnivore | 4.15833 | 0.00341 |