Cluster: A49.CMAG_4_CGC36
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: A49.CMAG_4
- CGC Family ID: CGCFAM_03130
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A49_contig_1089 | A49_contig_1089_2729 | 3110711 | 3111673 | + | 3.A.1.1.28 |
| TC | A49_contig_1089 | A49_contig_1089_2730 | 3111670 | 3112521 | + | 3.A.1.1.27 |
| CAZyme | A49_contig_1089 | A49_contig_1089_2731 | 3112537 | 3113556 | + | GH130_2 |
| pfam | A49_contig_1089 | A49_contig_1089_2732 | 3113589 | 3114770 | + | GlcNAc_2-epim |
| CAZyme | A49_contig_1089 | A49_contig_1089_2733 | 3114757 | 3115932 | + | GH130_1 |
| CAZyme | A49_contig_1089 | A49_contig_1089_2734 | 3115967 | 3118741 | + | CBM23 | GH5_7 |
Gene ID: A49_contig_1089_2729
Type: TC
Location: 3110711 - 3111673 (+)
Type: TC
Location: 3110711 - 3111673 (+)
Gene ID: A49_contig_1089_2730
Type: TC
Location: 3111670 - 3112521 (+)
Type: TC
Location: 3111670 - 3112521 (+)
Gene ID: A49_contig_1089_2731
Type: CAZyme
Location: 3112537 - 3113556 (+)
Type: CAZyme
Location: 3112537 - 3113556 (+)
Gene ID: A49_contig_1089_2732
Type: pfam
Location: 3113589 - 3114770 (+)
Type: pfam
Location: 3113589 - 3114770 (+)
Gene ID: A49_contig_1089_2733
Type: CAZyme
Location: 3114757 - 3115932 (+)
Type: CAZyme
Location: 3114757 - 3115932 (+)
Gene ID: A49_contig_1089_2734
Type: CAZyme
Location: 3115967 - 3118741 (+)
Type: CAZyme
Location: 3115967 - 3118741 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C callidus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A49_contig_1089_2730 | vegan > omnivore | 1.37953 | 0.00068 |
| A49_contig_1089_2730 | vegetarian > omnivore | 1.03300 | 0.00341 |
| A49_contig_1089_2732 | vegetarian > vegan | 1.35577 | 0.03503 |
| A49_contig_1089_2734 | vegan > omnivore | 2.10395 | 0.00068 |
| A49_contig_1089_2734 | vegetarian > omnivore | 1.80221 | 0.00341 |