Cluster: A49.CMAG_4_CGC34
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate: fructan
- Genome ID: A49.CMAG_4
- CGC Family ID: CGCFAM_01080
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A49_contig_1089 | A49_contig_1089_2486 | 2835207 | 2836106 | + | 3.A.1.1.20 |
| TC | A49_contig_1089 | A49_contig_1089_2487 | 2836078 | 2836929 | + | 3.A.1.1.20 |
| TC | A49_contig_1089 | A49_contig_1089_2488 | 2836933 | 2838027 | + | 3.A.1.1.27 |
| CAZyme | A49_contig_1089 | A49_contig_1089_2489 | 2838041 | 2839339 | + | GH32 |
| NULL(UNKNOWN) | A49_contig_1089 | A49_contig_1089_2490 | 2839996 | 2840520 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | A49_contig_1089 | A49_contig_1089_2491 | 2840768 | 2841793 | - | LacI |
| CAZyme | A49_contig_1089 | A49_contig_1089_2492 | 2842279 | 2843688 | + | GH13_18 |
Gene ID: A49_contig_1089_2486
Type: TC
Location: 2835207 - 2836106 (+)
Type: TC
Location: 2835207 - 2836106 (+)
Gene ID: A49_contig_1089_2487
Type: TC
Location: 2836078 - 2836929 (+)
Type: TC
Location: 2836078 - 2836929 (+)
Gene ID: A49_contig_1089_2488
Type: TC
Location: 2836933 - 2838027 (+)
Type: TC
Location: 2836933 - 2838027 (+)
Gene ID: A49_contig_1089_2489
Type: CAZyme
Location: 2838041 - 2839339 (+)
Type: CAZyme
Location: 2838041 - 2839339 (+)
Gene ID: A49_contig_1089_2490
Type:
Location: 2839996 - 2840520 (+)
Type:
Location: 2839996 - 2840520 (+)
Gene ID: A49_contig_1089_2491
Type: TF
Location: 2840768 - 2841793 (-)
Type: TF
Location: 2840768 - 2841793 (-)
Gene ID: A49_contig_1089_2492
Type: CAZyme
Location: 2842279 - 2843688 (+)
Type: CAZyme
Location: 2842279 - 2843688 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C callidus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A49_contig_1089_2486 | vegan > omnivore | 1.42362 | 0.00068 |
| A49_contig_1089_2487 | vegan > omnivore | 1.16348 | 0.00068 |
| A49_contig_1089_2490 | vegan > omnivore | 16.20826 | 0.00068 |
| A49_contig_1089_2490 | vegetarian > omnivore | 16.65474 | 0.00341 |
| A49_contig_1089_2491 | vegan > omnivore | 1.07210 | 0.00068 |
| A49_contig_1089_2492 | vegetarian > omnivore | 1.87536 | 0.00341 |