Cluster: A49.CMAG_4_CGC31
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: A49.CMAG_4
- CGC Family ID: CGCFAM_04444
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A49_contig_1089 | A49_contig_1089_2152 | 2473775 | 2476465 | + | 9.B.74.1.3 |
| TC | A49_contig_1089 | A49_contig_1089_2153 | 2476741 | 2479359 | - | 3.A.3.2.21 |
| pfam | A49_contig_1089 | A49_contig_1089_2154 | 2479845 | 2481452 | + | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Amidase_3 | Choline_bind_3 | Choline_bind_3 | Choline_bind_3 | Choline_bind_3 |
| CAZyme | A49_contig_1089 | A49_contig_1089_2155 | 2481586 | 2482539 | + | GT2 |
| TC | A49_contig_1089 | A49_contig_1089_2156 | 2482543 | 2483544 | + | 8.A.5.1.3 |
| TC | A49_contig_1089 | A49_contig_1089_2157 | 2484061 | 2485530 | - | 2.A.66.1.32 |
Gene ID: A49_contig_1089_2152
Type: TC
Location: 2473775 - 2476465 (+)
Type: TC
Location: 2473775 - 2476465 (+)
Gene ID: A49_contig_1089_2153
Type: TC
Location: 2476741 - 2479359 (-)
Type: TC
Location: 2476741 - 2479359 (-)
Gene ID: A49_contig_1089_2154
Type: pfam
Location: 2479845 - 2481452 (+)
Type: pfam
Location: 2479845 - 2481452 (+)
Gene ID: A49_contig_1089_2155
Type: CAZyme
Location: 2481586 - 2482539 (+)
Type: CAZyme
Location: 2481586 - 2482539 (+)
Gene ID: A49_contig_1089_2156
Type: TC
Location: 2482543 - 2483544 (+)
Type: TC
Location: 2482543 - 2483544 (+)
Gene ID: A49_contig_1089_2157
Type: TC
Location: 2484061 - 2485530 (-)
Type: TC
Location: 2484061 - 2485530 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C callidus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A49_contig_1089_2152 | vegan > omnivore | 1.19002 | 0.00068 |
| A49_contig_1089_2152 | vegetarian > omnivore | 1.21576 | 0.00341 |
| A49_contig_1089_2154 | vegan > omnivore | 2.88990 | 0.00068 |
| A49_contig_1089_2154 | vegetarian > omnivore | 2.76259 | 0.00341 |
| A49_contig_1089_2155 | vegan > omnivore | 2.38674 | 0.00068 |
| A49_contig_1089_2155 | vegetarian > omnivore | 1.90077 | 0.00341 |
| A49_contig_1089_2157 | vegan > omnivore | 1.40634 | 0.00068 |
| A49_contig_1089_2157 | vegetarian > omnivore | 1.35516 | 0.00341 |