Cluster: A49.CMAG_4_CGC30
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: A49.CMAG_4
- CGC Family ID: CGCFAM_06784
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A49_contig_1089 | A49_contig_1089_2048 | 2373483 | 2375159 | + | 3.A.15.4.1 |
| TC | A49_contig_1089 | A49_contig_1089_2049 | 2375187 | 2376236 | + | 3.A.15.2.1 |
| pfam | A49_contig_1089 | A49_contig_1089_2050 | 2376274 | 2379585 | + | N_methyl |
| TC | A49_contig_1089 | A49_contig_1089_2051 | 2379660 | 2380445 | - | 3.A.15.3.1 |
| pfam | A49_contig_1089 | A49_contig_1089_2052 | 2380651 | 2381232 | + | PTAC |
| CAZyme | A49_contig_1089 | A49_contig_1089_2053 | 2381380 | 2383515 | + | CBM79 | CBM79 | GH5_4 |
| TC | A49_contig_1089 | A49_contig_1089_2054 | 2383695 | 2384306 | + | 2.A.115.2.14 |
Gene ID: A49_contig_1089_2048
Type: TC
Location: 2373483 - 2375159 (+)
Type: TC
Location: 2373483 - 2375159 (+)
Gene ID: A49_contig_1089_2049
Type: TC
Location: 2375187 - 2376236 (+)
Type: TC
Location: 2375187 - 2376236 (+)
Gene ID: A49_contig_1089_2050
Type: pfam
Location: 2376274 - 2379585 (+)
Type: pfam
Location: 2376274 - 2379585 (+)
Gene ID: A49_contig_1089_2051
Type: TC
Location: 2379660 - 2380445 (-)
Type: TC
Location: 2379660 - 2380445 (-)
Gene ID: A49_contig_1089_2052
Type: pfam
Location: 2380651 - 2381232 (+)
Type: pfam
Location: 2380651 - 2381232 (+)
Gene ID: A49_contig_1089_2053
Type: CAZyme
Location: 2381380 - 2383515 (+)
Type: CAZyme
Location: 2381380 - 2383515 (+)
Gene ID: A49_contig_1089_2054
Type: TC
Location: 2383695 - 2384306 (+)
Type: TC
Location: 2383695 - 2384306 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C callidus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A49_contig_1089_2049 | vegan > omnivore | 1.50382 | 0.00068 |
| A49_contig_1089_2051 | vegan > omnivore | 2.49688 | 0.00068 |
| A49_contig_1089_2051 | vegetarian > omnivore | 2.39613 | 0.00341 |
| A49_contig_1089_2052 | vegan > omnivore | 1.12872 | 0.00068 |
| A49_contig_1089_2053 | vegan > omnivore | 1.74546 | 0.00068 |
| A49_contig_1089_2053 | vegetarian > omnivore | 1.69409 | 0.00341 |