Cluster: A49.CMAG_4_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: A49.CMAG_4
- CGC Family ID: CGCFAM_06783
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A49_contig_1089 | A49_contig_1089_322 | 347820 | 349610 | - | 3.A.1.120.6 |
| STP | A49_contig_1089 | A49_contig_1089_323 | 349937 | 351916 | + | HATPase_c |
| pfam | A49_contig_1089 | A49_contig_1089_324 | 351931 | 354177 | + | DNA_topoisoIV |
| CAZyme | A49_contig_1089 | A49_contig_1089_325 | 354256 | 356814 | - | CBM76 | GH44 |
| pfam | A49_contig_1089 | A49_contig_1089_326 | 357066 | 358301 | + | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | A49_contig_1089 | A49_contig_1089_327 | 358327 | 359667 | + | CE3 |
Gene ID: A49_contig_1089_322
Type: TC
Location: 347820 - 349610 (-)
Type: TC
Location: 347820 - 349610 (-)
Gene ID: A49_contig_1089_323
Type: STP
Location: 349937 - 351916 (+)
Type: STP
Location: 349937 - 351916 (+)
Gene ID: A49_contig_1089_324
Type: pfam
Location: 351931 - 354177 (+)
Type: pfam
Location: 351931 - 354177 (+)
Gene ID: A49_contig_1089_325
Type: CAZyme
Location: 354256 - 356814 (-)
Type: CAZyme
Location: 354256 - 356814 (-)
Gene ID: A49_contig_1089_326
Type: pfam
Location: 357066 - 358301 (+)
Type: pfam
Location: 357066 - 358301 (+)
Gene ID: A49_contig_1089_327
Type: CAZyme
Location: 358327 - 359667 (+)
Type: CAZyme
Location: 358327 - 359667 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C callidus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A49_contig_1089_322 | vegan > omnivore | 1.38906 | 0.00068 |
| A49_contig_1089_322 | vegetarian > omnivore | 1.42832 | 0.00341 |
| A49_contig_1089_325 | vegan > omnivore | 2.57486 | 0.00068 |
| A49_contig_1089_325 | vegetarian > omnivore | 2.82435 | 0.00341 |
| A49_contig_1089_326 | vegan > omnivore | 3.92468 | 0.00068 |
| A49_contig_1089_326 | vegetarian > omnivore | 4.12266 | 0.00341 |
| A49_contig_1089_327 | vegan > omnivore | 2.42625 | 0.00068 |
| A49_contig_1089_327 | vegetarian > omnivore | 2.47835 | 0.00341 |