Cluster: A49.CMAG_4_CGC29
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: A49.CMAG_4
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A49_contig_1089 | A49_contig_1089_2001 | 2317760 | 2318443 | + | 1.A.16.5.2 |
| TC | A49_contig_1089 | A49_contig_1089_2002 | 2318517 | 2319749 | - | 2.A.49.9.3 |
| peptidase | A49_contig_1089 | A49_contig_1089_2003 | 2320223 | 2320948 | + | M95.UPW |
| CAZyme | A49_contig_1089 | A49_contig_1089_2004 | 2321205 | 2324657 | + | CBM79 | GH9 |
| CAZyme | A49_contig_1089 | A49_contig_1089_2005 | 2325014 | 2328190 | + | CBM4 | GH9 |
Gene ID: A49_contig_1089_2001
Type: TC
Location: 2317760 - 2318443 (+)
Type: TC
Location: 2317760 - 2318443 (+)
Gene ID: A49_contig_1089_2002
Type: TC
Location: 2318517 - 2319749 (-)
Type: TC
Location: 2318517 - 2319749 (-)
Gene ID: A49_contig_1089_2003
Type: peptidase
Location: 2320223 - 2320948 (+)
Type: peptidase
Location: 2320223 - 2320948 (+)
Gene ID: A49_contig_1089_2004
Type: CAZyme
Location: 2321205 - 2324657 (+)
Type: CAZyme
Location: 2321205 - 2324657 (+)
Gene ID: A49_contig_1089_2005
Type: CAZyme
Location: 2325014 - 2328190 (+)
Type: CAZyme
Location: 2325014 - 2328190 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C callidus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A49_contig_1089_2001 | vegan > omnivore | 1.08532 | 0.00068 |
| A49_contig_1089_2001 | vegetarian > omnivore | 1.45315 | 0.00341 |
| A49_contig_1089_2002 | vegan > omnivore | 1.71457 | 0.00068 |
| A49_contig_1089_2002 | vegetarian > omnivore | 1.43145 | 0.00341 |
| A49_contig_1089_2003 | vegan > omnivore | 1.80854 | 0.00068 |
| A49_contig_1089_2003 | vegetarian > omnivore | 1.39995 | 0.00341 |
| A49_contig_1089_2004 | vegan > omnivore | 1.17994 | 0.00068 |
| A49_contig_1089_2004 | vegetarian > omnivore | 1.02722 | 0.00341 |
| A49_contig_1089_2005 | vegan > omnivore | 1.26826 | 0.00068 |