Cluster: A49.CMAG_4_CGC28
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: A49.CMAG_4
- CGC Family ID: CGCFAM_00204
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A49_contig_1089 | A49_contig_1089_1876 | 2176649 | 2179045 | - | GH94 |
| TF | A49_contig_1089 | A49_contig_1089_1877 | 2179313 | 2179690 | + | GntR |
| TC | A49_contig_1089 | A49_contig_1089_1878 | 2179693 | 2180556 | + | 3.A.1.149.1 |
Gene ID: A49_contig_1089_1876
Type: CAZyme
Location: 2176649 - 2179045 (-)
Type: CAZyme
Location: 2176649 - 2179045 (-)
Gene ID: A49_contig_1089_1877
Type: TF
Location: 2179313 - 2179690 (+)
Type: TF
Location: 2179313 - 2179690 (+)
Gene ID: A49_contig_1089_1878
Type: TC
Location: 2179693 - 2180556 (+)
Type: TC
Location: 2179693 - 2180556 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C callidus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A49_contig_1089_1877 | vegan > omnivore | 2.03971 | 0.00068 |
| A49_contig_1089_1877 | vegetarian > omnivore | 2.62309 | 0.00341 |
| A49_contig_1089_1878 | vegan > omnivore | 1.28553 | 0.00068 |
| A49_contig_1089_1878 | vegetarian > omnivore | 1.41930 | 0.00341 |