Cluster: A49.CMAG_4_CGC27
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate:
- Genome ID: A49.CMAG_4
- CGC Family ID: CGCFAM_00317
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A49_contig_1089 | A49_contig_1089_1833 | 2121254 | 2122888 | + | 9.B.160.1.10 |
| peptidase | A49_contig_1089 | A49_contig_1089_1834 | 2123250 | 2125376 | + | U69.UPW |
| TC | A49_contig_1089 | A49_contig_1089_1835 | 2125553 | 2127118 | + | 9.B.18.1.3 |
| pfam | A49_contig_1089 | A49_contig_1089_1836 | 2127115 | 2128191 | + | NTP_transferase | NTP_transf_3 | ManC_GMP_beta-helix |
| pfam | A49_contig_1089 | A49_contig_1089_1837 | 2128592 | 2129626 | + | Epimerase | RmlD_sub_bind | GDP_Man_Dehyd |
| CAZyme | A49_contig_1089 | A49_contig_1089_1838 | 2129873 | 2131024 | + | GT4 |
| CAZyme | A49_contig_1089 | A49_contig_1089_1839 | 2131017 | 2132168 | + | GT4 |
| pfam | A49_contig_1089 | A49_contig_1089_1840 | 2132165 | 2133106 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | GDP_Man_Dehyd |
| NULL(UNKNOWN) | A49_contig_1089 | A49_contig_1089_1841 | 2133184 | 2133783 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A49_contig_1089 | A49_contig_1089_1842 | 2134176 | 2134883 | + | 9.B.100.1.1 |
Gene ID: A49_contig_1089_1833
Type: TC
Location: 2121254 - 2122888 (+)
Type: TC
Location: 2121254 - 2122888 (+)
Gene ID: A49_contig_1089_1834
Type: peptidase
Location: 2123250 - 2125376 (+)
Type: peptidase
Location: 2123250 - 2125376 (+)
Gene ID: A49_contig_1089_1835
Type: TC
Location: 2125553 - 2127118 (+)
Type: TC
Location: 2125553 - 2127118 (+)
Gene ID: A49_contig_1089_1836
Type: pfam
Location: 2127115 - 2128191 (+)
Type: pfam
Location: 2127115 - 2128191 (+)
Gene ID: A49_contig_1089_1837
Type: pfam
Location: 2128592 - 2129626 (+)
Type: pfam
Location: 2128592 - 2129626 (+)
Gene ID: A49_contig_1089_1838
Type: CAZyme
Location: 2129873 - 2131024 (+)
Type: CAZyme
Location: 2129873 - 2131024 (+)
Gene ID: A49_contig_1089_1839
Type: CAZyme
Location: 2131017 - 2132168 (+)
Type: CAZyme
Location: 2131017 - 2132168 (+)
Gene ID: A49_contig_1089_1840
Type: pfam
Location: 2132165 - 2133106 (+)
Type: pfam
Location: 2132165 - 2133106 (+)
Gene ID: A49_contig_1089_1841
Type:
Location: 2133184 - 2133783 (+)
Type:
Location: 2133184 - 2133783 (+)
Gene ID: A49_contig_1089_1842
Type: TC
Location: 2134176 - 2134883 (+)
Type: TC
Location: 2134176 - 2134883 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C callidus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A49_contig_1089_1833 | vegan > omnivore | 2.03910 | 0.00068 |
| A49_contig_1089_1833 | vegetarian > omnivore | 2.20618 | 0.00341 |
| A49_contig_1089_1834 | vegan > omnivore | 2.07550 | 0.00068 |
| A49_contig_1089_1834 | vegetarian > omnivore | 2.44774 | 0.00341 |
| A49_contig_1089_1835 | vegetarian > omnivore | 1.01505 | 0.00341 |
| A49_contig_1089_1840 | vegan > omnivore | 1.03146 | 0.00068 |
| A49_contig_1089_1841 | vegan > omnivore | 3.51861 | 0.00068 |
| A49_contig_1089_1841 | vegetarian > omnivore | 2.97179 | 0.00341 |
| A49_contig_1089_1842 | vegan > omnivore | 1.17530 | 0.00068 |