Cluster: A49.CMAG_4_CGC26
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: A49.CMAG_4
- CGC Family ID: CGCFAM_03009
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A49_contig_1089 | A49_contig_1089_1754 | 2035046 | 2037238 | + | GH74 | GH74 |
| CAZyme | A49_contig_1089 | A49_contig_1089_1755 | 2037277 | 2038011 | + | GH25 |
| pfam | A49_contig_1089 | A49_contig_1089_1756 | 2038024 | 2039001 | + | PMI_typeI_cat | MPI_cupin_dom |
| pfam | A49_contig_1089 | A49_contig_1089_1757 | 2039044 | 2039988 | + | ROK | BcrAD_BadFG |
| CAZyme | A49_contig_1089 | A49_contig_1089_1758 | 2040305 | 2043142 | + | GH5_4 |
| TC | A49_contig_1089 | A49_contig_1089_1759 | 2043992 | 2044723 | + | 3.A.2.1.5 |
| TC | A49_contig_1089 | A49_contig_1089_1760 | 2044768 | 2044974 | + | 3.A.2.1.5 |
| TC | A49_contig_1089 | A49_contig_1089_1761 | 2045023 | 2045229 | + | 3.A.2.1.2 |
| pfam | A49_contig_1089 | A49_contig_1089_1762 | 2045273 | 2045785 | + | ATP-synt_B |
| pfam | A49_contig_1089 | A49_contig_1089_1763 | 2045782 | 2046285 | + | OSCP |
| TC | A49_contig_1089 | A49_contig_1089_1764 | 2046295 | 2047803 | + | 3.A.2.1.5 |
| TC | A49_contig_1089 | A49_contig_1089_1765 | 2047805 | 2048701 | + | 3.A.2.1.5 |
| TC | A49_contig_1089 | A49_contig_1089_1766 | 2049005 | 2050399 | + | 3.A.2.1.2 |
Gene ID: A49_contig_1089_1754
Type: CAZyme
Location: 2035046 - 2037238 (+)
Type: CAZyme
Location: 2035046 - 2037238 (+)
Gene ID: A49_contig_1089_1755
Type: CAZyme
Location: 2037277 - 2038011 (+)
Type: CAZyme
Location: 2037277 - 2038011 (+)
Gene ID: A49_contig_1089_1756
Type: pfam
Location: 2038024 - 2039001 (+)
Type: pfam
Location: 2038024 - 2039001 (+)
Gene ID: A49_contig_1089_1757
Type: pfam
Location: 2039044 - 2039988 (+)
Type: pfam
Location: 2039044 - 2039988 (+)
Gene ID: A49_contig_1089_1758
Type: CAZyme
Location: 2040305 - 2043142 (+)
Type: CAZyme
Location: 2040305 - 2043142 (+)
Gene ID: A49_contig_1089_1759
Type: TC
Location: 2043992 - 2044723 (+)
Type: TC
Location: 2043992 - 2044723 (+)
Gene ID: A49_contig_1089_1760
Type: TC
Location: 2044768 - 2044974 (+)
Type: TC
Location: 2044768 - 2044974 (+)
Gene ID: A49_contig_1089_1761
Type: TC
Location: 2045023 - 2045229 (+)
Type: TC
Location: 2045023 - 2045229 (+)
Gene ID: A49_contig_1089_1762
Type: pfam
Location: 2045273 - 2045785 (+)
Type: pfam
Location: 2045273 - 2045785 (+)
Gene ID: A49_contig_1089_1763
Type: pfam
Location: 2045782 - 2046285 (+)
Type: pfam
Location: 2045782 - 2046285 (+)
Gene ID: A49_contig_1089_1764
Type: TC
Location: 2046295 - 2047803 (+)
Type: TC
Location: 2046295 - 2047803 (+)
Gene ID: A49_contig_1089_1765
Type: TC
Location: 2047805 - 2048701 (+)
Type: TC
Location: 2047805 - 2048701 (+)
Gene ID: A49_contig_1089_1766
Type: TC
Location: 2049005 - 2050399 (+)
Type: TC
Location: 2049005 - 2050399 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C callidus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A49_contig_1089_1754 | vegan > omnivore | 1.39305 | 0.00068 |
| A49_contig_1089_1754 | vegetarian > omnivore | 1.40352 | 0.00341 |
| A49_contig_1089_1755 | vegan > omnivore | 1.06974 | 0.00068 |
| A49_contig_1089_1755 | vegetarian > omnivore | 1.09781 | 0.00341 |
| A49_contig_1089_1760 | vegan > omnivore | 1.24315 | 0.00068 |
| A49_contig_1089_1760 | vegetarian > omnivore | 1.10750 | 0.00341 |
| A49_contig_1089_1762 | vegetarian > omnivore | 1.06989 | 0.00341 |
| A49_contig_1089_1763 | vegan > omnivore | 1.31934 | 0.00068 |
| A49_contig_1089_1763 | vegetarian > omnivore | 1.43146 | 0.00341 |