Cluster: A49.CMAG_4_CGC22
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: A49.CMAG_4
- CGC Family ID: CGCFAM_00011
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A49_contig_1089 | A49_contig_1089_1445 | 1658406 | 1659404 | - | GT2 |
| NULL(UNKNOWN) | A49_contig_1089 | A49_contig_1089_1446 | 1659439 | 1661940 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | A49_contig_1089 | A49_contig_1089_1447 | 1661974 | 1663167 | - | Glycos_transf_1 | Glyco_trans_1_2 | Glyco_trans_1_4 |
| CAZyme | A49_contig_1089 | A49_contig_1089_1448 | 1663172 | 1664359 | - | GT4 |
| CAZyme | A49_contig_1089 | A49_contig_1089_1449 | 1664507 | 1665607 | - | GT4 |
| NULL(UNKNOWN) | A49_contig_1089 | A49_contig_1089_1450 | 1665604 | 1666095 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | A49_contig_1089 | A49_contig_1089_1451 | 1666111 | 1667160 | - | Methyltransf_21 |
| TC | A49_contig_1089 | A49_contig_1089_1452 | 1667167 | 1668534 | - | 3.A.1.103.1 |
| TC | A49_contig_1089 | A49_contig_1089_1453 | 1668534 | 1669310 | - | 3.A.1.103.4 |
| TC | A49_contig_1089 | A49_contig_1089_1454 | 1669587 | 1669826 | - | 3.D.1.6.4 |
Gene ID: A49_contig_1089_1445
Type: CAZyme
Location: 1658406 - 1659404 (-)
Type: CAZyme
Location: 1658406 - 1659404 (-)
Gene ID: A49_contig_1089_1446
Type:
Location: 1659439 - 1661940 (-)
Type:
Location: 1659439 - 1661940 (-)
Gene ID: A49_contig_1089_1447
Type: pfam
Location: 1661974 - 1663167 (-)
Type: pfam
Location: 1661974 - 1663167 (-)
Gene ID: A49_contig_1089_1448
Type: CAZyme
Location: 1663172 - 1664359 (-)
Type: CAZyme
Location: 1663172 - 1664359 (-)
Gene ID: A49_contig_1089_1449
Type: CAZyme
Location: 1664507 - 1665607 (-)
Type: CAZyme
Location: 1664507 - 1665607 (-)
Gene ID: A49_contig_1089_1450
Type:
Location: 1665604 - 1666095 (-)
Type:
Location: 1665604 - 1666095 (-)
Gene ID: A49_contig_1089_1451
Type: pfam
Location: 1666111 - 1667160 (-)
Type: pfam
Location: 1666111 - 1667160 (-)
Gene ID: A49_contig_1089_1452
Type: TC
Location: 1667167 - 1668534 (-)
Type: TC
Location: 1667167 - 1668534 (-)
Gene ID: A49_contig_1089_1453
Type: TC
Location: 1668534 - 1669310 (-)
Type: TC
Location: 1668534 - 1669310 (-)
Gene ID: A49_contig_1089_1454
Type: TC
Location: 1669587 - 1669826 (-)
Type: TC
Location: 1669587 - 1669826 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C callidus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A49_contig_1089_1446 | vegan > omnivore | 2.52265 | 0.00068 |
| A49_contig_1089_1446 | vegetarian > omnivore | 2.38926 | 0.00341 |
| A49_contig_1089_1447 | vegan > omnivore | 1.42262 | 0.00068 |
| A49_contig_1089_1447 | vegetarian > omnivore | 1.46217 | 0.00341 |
| A49_contig_1089_1448 | vegan > omnivore | 1.06237 | 0.00068 |
| A49_contig_1089_1450 | vegan > omnivore | 1.01461 | 0.00068 |
| A49_contig_1089_1451 | vegan > omnivore | 1.69666 | 0.00068 |
| A49_contig_1089_1451 | vegetarian > omnivore | 1.72774 | 0.00341 |
| A49_contig_1089_1452 | vegan > omnivore | 1.23031 | 0.00068 |
| A49_contig_1089_1452 | vegetarian > omnivore | 1.12184 | 0.00341 |