Cluster: A49.CMAG_4_CGC21
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: A49.CMAG_4
- CGC Family ID: CGCFAM_06780
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A49_contig_1089 | A49_contig_1089_1403 | 1617193 | 1619037 | - | GH5_46 |
| pfam | A49_contig_1089 | A49_contig_1089_1404 | 1619533 | 1622151 | - | GTP_EFTU | EFG_C | EFG_IV | NYN_YacP | EFG_III | EF-G_D2 |
| TC | A49_contig_1089 | A49_contig_1089_1405 | 1622312 | 1623100 | - | 9.B.18.1.2 |
Gene ID: A49_contig_1089_1403
Type: CAZyme
Location: 1617193 - 1619037 (-)
Type: CAZyme
Location: 1617193 - 1619037 (-)
Gene ID: A49_contig_1089_1404
Type: pfam
Location: 1619533 - 1622151 (-)
Type: pfam
Location: 1619533 - 1622151 (-)
Gene ID: A49_contig_1089_1405
Type: TC
Location: 1622312 - 1623100 (-)
Type: TC
Location: 1622312 - 1623100 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C callidus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A49_contig_1089_1403 | vegan > omnivore | 1.34588 | 0.00068 |
| A49_contig_1089_1403 | vegetarian > omnivore | 1.58881 | 0.00341 |
| A49_contig_1089_1405 | vegan > omnivore | 1.98671 | 0.00068 |
| A49_contig_1089_1405 | vegetarian > omnivore | 1.39999 | 0.00341 |