Cluster: A49.CMAG_4_CGC20
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: A49.CMAG_4
- CGC Family ID: CGCFAM_03129
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A49_contig_1089 | A49_contig_1089_1261 | 1448061 | 1448990 | - | 3.A.1.132.6 |
| TF | A49_contig_1089 | A49_contig_1089_1262 | 1448987 | 1449385 | - | GntR |
| TF | A49_contig_1089 | A49_contig_1089_1263 | 1449695 | 1450234 | + | SpoVT_AbrB |
| CAZyme | A49_contig_1089 | A49_contig_1089_1264 | 1450590 | 1453385 | + | GH3 |
Gene ID: A49_contig_1089_1261
Type: TC
Location: 1448061 - 1448990 (-)
Type: TC
Location: 1448061 - 1448990 (-)
Gene ID: A49_contig_1089_1262
Type: TF
Location: 1448987 - 1449385 (-)
Type: TF
Location: 1448987 - 1449385 (-)
Gene ID: A49_contig_1089_1263
Type: TF
Location: 1449695 - 1450234 (+)
Type: TF
Location: 1449695 - 1450234 (+)
Gene ID: A49_contig_1089_1264
Type: CAZyme
Location: 1450590 - 1453385 (+)
Type: CAZyme
Location: 1450590 - 1453385 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C callidus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A49_contig_1089_1261 | vegan > omnivore | 1.17362 | 0.00068 |
| A49_contig_1089_1262 | vegan > omnivore | 2.27119 | 0.00068 |
| A49_contig_1089_1262 | vegetarian > omnivore | 1.87322 | 0.00341 |
| A49_contig_1089_1264 | vegan > omnivore | 1.59682 | 0.00068 |
| A49_contig_1089_1264 | vegetarian > omnivore | 1.17266 | 0.00341 |