Cluster: A49.CMAG_4_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: A49.CMAG_4
- CGC Family ID: CGCFAM_06779
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A49_contig_1089 | A49_contig_1089_152 | 167514 | 169838 | + | 3.A.9.1.2 |
| TC | A49_contig_1089 | A49_contig_1089_153 | 170729 | 172108 | + | 2.A.66.1.33 |
| TC | A49_contig_1089 | A49_contig_1089_154 | 172255 | 172626 | + | 1.E.14.1.15 |
| TC | A49_contig_1089 | A49_contig_1089_155 | 172619 | 173311 | + | 2.A.122.1.6 |
| TF | A49_contig_1089 | A49_contig_1089_156 | 173320 | 174006 | + | GntR |
| CAZyme | A49_contig_1089 | A49_contig_1089_157 | 174203 | 176011 | + | GH5_4 |
| TC | A49_contig_1089 | A49_contig_1089_158 | 176867 | 178240 | + | 2.A.66.1.25 |
Gene ID: A49_contig_1089_152
Type: TC
Location: 167514 - 169838 (+)
Type: TC
Location: 167514 - 169838 (+)
Gene ID: A49_contig_1089_153
Type: TC
Location: 170729 - 172108 (+)
Type: TC
Location: 170729 - 172108 (+)
Gene ID: A49_contig_1089_154
Type: TC
Location: 172255 - 172626 (+)
Type: TC
Location: 172255 - 172626 (+)
Gene ID: A49_contig_1089_155
Type: TC
Location: 172619 - 173311 (+)
Type: TC
Location: 172619 - 173311 (+)
Gene ID: A49_contig_1089_156
Type: TF
Location: 173320 - 174006 (+)
Type: TF
Location: 173320 - 174006 (+)
Gene ID: A49_contig_1089_157
Type: CAZyme
Location: 174203 - 176011 (+)
Type: CAZyme
Location: 174203 - 176011 (+)
Gene ID: A49_contig_1089_158
Type: TC
Location: 176867 - 178240 (+)
Type: TC
Location: 176867 - 178240 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C callidus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A49_contig_1089_153 | vegan > omnivore | 1.67483 | 0.00068 |
| A49_contig_1089_153 | vegetarian > omnivore | 1.59665 | 0.00341 |
| A49_contig_1089_155 | vegan > omnivore | 1.33147 | 0.00068 |
| A49_contig_1089_155 | vegetarian > omnivore | 1.75743 | 0.00341 |
| A49_contig_1089_156 | vegan > omnivore | 2.06852 | 0.00068 |
| A49_contig_1089_156 | vegetarian > omnivore | 2.30534 | 0.00341 |
| A49_contig_1089_157 | vegan > omnivore | 3.29802 | 0.00068 |
| A49_contig_1089_157 | vegetarian > omnivore | 3.52294 | 0.00341 |
| A49_contig_1089_158 | vegan > omnivore | 1.53742 | 0.00068 |
| A49_contig_1089_158 | vegetarian > omnivore | 1.85043 | 0.00341 |