Cluster: A49.CMAG_4_CGC18
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: A49.CMAG_4
- CGC Family ID: CGCFAM_01574
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A49_contig_1089 | A49_contig_1089_1141 | 1314149 | 1315675 | - | CE20 |
| pfam | A49_contig_1089 | A49_contig_1089_1142 | 1316066 | 1316668 | + | Flavin_Reduct |
| peptidase | A49_contig_1089 | A49_contig_1089_1143 | 1317356 | 1318081 | + | S14.UPW |
| TC | A49_contig_1089 | A49_contig_1089_1144 | 1318134 | 1320734 | + | 3.A.12.1.1 |
| pfam | A49_contig_1089 | A49_contig_1089_1145 | 1321097 | 1322998 | + | Radical_SAM_N | DUF3362 |
| TC | A49_contig_1089 | A49_contig_1089_1146 | 1323148 | 1323912 | + | 3.A.11.1.4 |
| pfam | A49_contig_1089 | A49_contig_1089_1147 | 1323923 | 1324135 | + | DUF3006 |
| TC | A49_contig_1089 | A49_contig_1089_1148 | 1324162 | 1325520 | + | 2.A.38.1.1 |
| TC | A49_contig_1089 | A49_contig_1089_1149 | 1325534 | 1326979 | + | 2.A.38.1.1 |
Gene ID: A49_contig_1089_1141
Type: CAZyme
Location: 1314149 - 1315675 (-)
Type: CAZyme
Location: 1314149 - 1315675 (-)
Gene ID: A49_contig_1089_1142
Type: pfam
Location: 1316066 - 1316668 (+)
Type: pfam
Location: 1316066 - 1316668 (+)
Gene ID: A49_contig_1089_1143
Type: peptidase
Location: 1317356 - 1318081 (+)
Type: peptidase
Location: 1317356 - 1318081 (+)
Gene ID: A49_contig_1089_1144
Type: TC
Location: 1318134 - 1320734 (+)
Type: TC
Location: 1318134 - 1320734 (+)
Gene ID: A49_contig_1089_1145
Type: pfam
Location: 1321097 - 1322998 (+)
Type: pfam
Location: 1321097 - 1322998 (+)
Gene ID: A49_contig_1089_1146
Type: TC
Location: 1323148 - 1323912 (+)
Type: TC
Location: 1323148 - 1323912 (+)
Gene ID: A49_contig_1089_1147
Type: pfam
Location: 1323923 - 1324135 (+)
Type: pfam
Location: 1323923 - 1324135 (+)
Gene ID: A49_contig_1089_1148
Type: TC
Location: 1324162 - 1325520 (+)
Type: TC
Location: 1324162 - 1325520 (+)
Gene ID: A49_contig_1089_1149
Type: TC
Location: 1325534 - 1326979 (+)
Type: TC
Location: 1325534 - 1326979 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C callidus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A49_contig_1089_1141 | vegan > omnivore | 1.92471 | 0.00068 |
| A49_contig_1089_1141 | vegetarian > omnivore | 1.99908 | 0.00341 |
| A49_contig_1089_1142 | vegan > omnivore | 2.09385 | 0.00068 |
| A49_contig_1089_1142 | vegetarian > omnivore | 1.97465 | 0.00341 |
| A49_contig_1089_1143 | vegan > omnivore | 1.32088 | 0.00068 |
| A49_contig_1089_1146 | vegan > omnivore | 1.42499 | 0.00068 |
| A49_contig_1089_1146 | vegetarian > omnivore | 1.52809 | 0.00341 |
| A49_contig_1089_1147 | vegan > omnivore | 1.68720 | 0.00068 |
| A49_contig_1089_1147 | vegetarian > omnivore | 1.57481 | 0.00341 |
| A49_contig_1089_1148 | vegan > omnivore | 1.66494 | 0.00068 |
| A49_contig_1089_1148 | vegetarian > omnivore | 1.65185 | 0.00341 |
| A49_contig_1089_1149 | vegan > omnivore | 1.14706 | 0.00068 |