Cluster: A49.CMAG_4_CGC16
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: A49.CMAG_4
- CGC Family ID: CGCFAM_04442
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A49_contig_1089 | A49_contig_1089_1030 | 1176947 | 1178869 | - | 3.A.1.121.4 |
| pfam | A49_contig_1089 | A49_contig_1089_1031 | 1179322 | 1179645 | - | DUF1292 |
| pfam | A49_contig_1089 | A49_contig_1089_1032 | 1179889 | 1181475 | - | Transpeptidase |
| CAZyme | A49_contig_1089 | A49_contig_1089_1033 | 1181583 | 1183100 | - | CBM91 | GH43_12 |
Gene ID: A49_contig_1089_1030
Type: TC
Location: 1176947 - 1178869 (-)
Type: TC
Location: 1176947 - 1178869 (-)
Gene ID: A49_contig_1089_1031
Type: pfam
Location: 1179322 - 1179645 (-)
Type: pfam
Location: 1179322 - 1179645 (-)
Gene ID: A49_contig_1089_1032
Type: pfam
Location: 1179889 - 1181475 (-)
Type: pfam
Location: 1179889 - 1181475 (-)
Gene ID: A49_contig_1089_1033
Type: CAZyme
Location: 1181583 - 1183100 (-)
Type: CAZyme
Location: 1181583 - 1183100 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C callidus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A49_contig_1089_1031 | vegan > omnivore | 1.32525 | 0.00068 |
| A49_contig_1089_1032 | vegan > omnivore | 2.49423 | 0.00068 |
| A49_contig_1089_1032 | vegetarian > omnivore | 2.39476 | 0.00341 |
| A49_contig_1089_1033 | vegan > omnivore | 1.93433 | 0.00068 |
| A49_contig_1089_1033 | vegetarian > omnivore | 1.84114 | 0.00341 |