Cluster: A49.CMAG_4_CGC15
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: A49.CMAG_4
- CGC Family ID: CGCFAM_00952
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A49_contig_1089 | A49_contig_1089_1006 | 1140468 | 1143500 | - | GH48 |
| NULL(UNKNOWN) | A49_contig_1089 | A49_contig_1089_1007 | 1143547 | 1143741 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A49_contig_1089 | A49_contig_1089_1008 | 1144056 | 1145132 | + | 3.A.1.132.1 |
| TC | A49_contig_1089 | A49_contig_1089_1009 | 1145139 | 1145870 | + | 3.A.1.132.1 |
Gene ID: A49_contig_1089_1006
Type: CAZyme
Location: 1140468 - 1143500 (-)
Type: CAZyme
Location: 1140468 - 1143500 (-)
Gene ID: A49_contig_1089_1007
Type:
Location: 1143547 - 1143741 (+)
Type:
Location: 1143547 - 1143741 (+)
Gene ID: A49_contig_1089_1008
Type: TC
Location: 1144056 - 1145132 (+)
Type: TC
Location: 1144056 - 1145132 (+)
Gene ID: A49_contig_1089_1009
Type: TC
Location: 1145139 - 1145870 (+)
Type: TC
Location: 1145139 - 1145870 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C callidus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A49_contig_1089_1007 | vegan > omnivore | 2.06119 | 0.00068 |
| A49_contig_1089_1007 | vegetarian > omnivore | 1.64311 | 0.00341 |
| A49_contig_1089_1008 | vegetarian > omnivore | 1.03374 | 0.00341 |
| A49_contig_1089_1009 | vegan > omnivore | 2.14550 | 0.00068 |
| A49_contig_1089_1009 | vegetarian > omnivore | 1.37504 | 0.00341 |