Cluster: A49.CMAG_4_CGC14
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: A49.CMAG_4
- CGC Family ID: CGCFAM_00089
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A49_contig_1089 | A49_contig_1089_962 | 1091659 | 1096104 | - | CBM79 |
| CAZyme | A49_contig_1089 | A49_contig_1089_963 | 1096480 | 1097694 | - | GH5_4 |
| pfam | A49_contig_1089 | A49_contig_1089_964 | 1097705 | 1099861 | - | S1 | Tex_N | HHH_3 | HHH_7 | Tex_YqgF | HHH_9 | Tex_central_region | S1_RRP5 |
| TC | A49_contig_1089 | A49_contig_1089_965 | 1100043 | 1101587 | - | 2.A.21.2.4 |
Gene ID: A49_contig_1089_962
Type: CAZyme
Location: 1091659 - 1096104 (-)
Type: CAZyme
Location: 1091659 - 1096104 (-)
Gene ID: A49_contig_1089_963
Type: CAZyme
Location: 1096480 - 1097694 (-)
Type: CAZyme
Location: 1096480 - 1097694 (-)
Gene ID: A49_contig_1089_964
Type: pfam
Location: 1097705 - 1099861 (-)
Type: pfam
Location: 1097705 - 1099861 (-)
Gene ID: A49_contig_1089_965
Type: TC
Location: 1100043 - 1101587 (-)
Type: TC
Location: 1100043 - 1101587 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C callidus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A49_contig_1089_962 | vegan > omnivore | 2.35814 | 0.00068 |
| A49_contig_1089_962 | vegetarian > omnivore | 2.41767 | 0.00341 |
| A49_contig_1089_963 | vegan > omnivore | 1.20035 | 0.00068 |
| A49_contig_1089_965 | vegan > omnivore | 1.03005 | 0.00068 |