Cluster: A49.CMAG_4_CGC13
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: A49.CMAG_4
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A49_contig_1089 | A49_contig_1089_944 | 1065703 | 1067565 | - | 3.A.3.6.10 |
| STP | A49_contig_1089 | A49_contig_1089_945 | 1067627 | 1067848 | - | HMA |
| CAZyme | A49_contig_1089 | A49_contig_1089_946 | 1068050 | 1069621 | - | GH26 |
| CAZyme | A49_contig_1089 | A49_contig_1089_947 | 1069705 | 1072026 | - | GH95 |
Gene ID: A49_contig_1089_944
Type: TC
Location: 1065703 - 1067565 (-)
Type: TC
Location: 1065703 - 1067565 (-)
Gene ID: A49_contig_1089_945
Type: STP
Location: 1067627 - 1067848 (-)
Type: STP
Location: 1067627 - 1067848 (-)
Gene ID: A49_contig_1089_946
Type: CAZyme
Location: 1068050 - 1069621 (-)
Type: CAZyme
Location: 1068050 - 1069621 (-)
Gene ID: A49_contig_1089_947
Type: CAZyme
Location: 1069705 - 1072026 (-)
Type: CAZyme
Location: 1069705 - 1072026 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C callidus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A49_contig_1089_945 | vegan > omnivore | 2.81242 | 0.00068 |
| A49_contig_1089_945 | vegetarian > omnivore | 2.00476 | 0.00341 |
| A49_contig_1089_946 | vegan > omnivore | 1.82589 | 0.00068 |
| A49_contig_1089_946 | vegetarian > omnivore | 1.14421 | 0.00341 |