Cluster: A49.CMAG_4_CGC11
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: A49.CMAG_4
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A49_contig_1089 | A49_contig_1089_771 | 880140 | 882236 | - | CBM35 | GH26 |
| pfam | A49_contig_1089 | A49_contig_1089_772 | 882511 | 883929 | + | Radical_SAM | BATS |
| pfam | A49_contig_1089 | A49_contig_1089_773 | 883942 | 885147 | + | GTP_EFTU | MMR_HSR1 | FeoB_N | HydF_dimer | HydF_tetramer |
| TC | A49_contig_1089 | A49_contig_1089_774 | 885265 | 887874 | - | 3.A.3.2.21 |
| TC | A49_contig_1089 | A49_contig_1089_775 | 888205 | 889806 | - | 3.D.10.1.6 |
Gene ID: A49_contig_1089_771
Type: CAZyme
Location: 880140 - 882236 (-)
Type: CAZyme
Location: 880140 - 882236 (-)
Gene ID: A49_contig_1089_772
Type: pfam
Location: 882511 - 883929 (+)
Type: pfam
Location: 882511 - 883929 (+)
Gene ID: A49_contig_1089_773
Type: pfam
Location: 883942 - 885147 (+)
Type: pfam
Location: 883942 - 885147 (+)
Gene ID: A49_contig_1089_774
Type: TC
Location: 885265 - 887874 (-)
Type: TC
Location: 885265 - 887874 (-)
Gene ID: A49_contig_1089_775
Type: TC
Location: 888205 - 889806 (-)
Type: TC
Location: 888205 - 889806 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C callidus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A49_contig_1089_771 | vegan > omnivore | 1.63943 | 0.00068 |
| A49_contig_1089_771 | vegetarian > omnivore | 1.38719 | 0.00341 |
| A49_contig_1089_773 | vegan > omnivore | 1.06465 | 0.00068 |
| A49_contig_1089_773 | vegetarian > omnivore | 1.11536 | 0.00341 |