Cluster: A49.CMAG_4_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: A49.CMAG_4
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A49_contig_1089 | A49_contig_1089_105 | 113721 | 114548 | - | 1.E.12.1.3 |
| NULL(UNKNOWN) | A49_contig_1089 | A49_contig_1089_106 | 114552 | 114962 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | A49_contig_1089 | A49_contig_1089_107 | 115262 | 115759 | + | NUDIX |
| CAZyme | A49_contig_1089 | A49_contig_1089_108 | 116010 | 116990 | + | GT2 |
Gene ID: A49_contig_1089_105
Type: TC
Location: 113721 - 114548 (-)
Type: TC
Location: 113721 - 114548 (-)
Gene ID: A49_contig_1089_106
Type:
Location: 114552 - 114962 (-)
Type:
Location: 114552 - 114962 (-)
Gene ID: A49_contig_1089_107
Type: STP
Location: 115262 - 115759 (+)
Type: STP
Location: 115262 - 115759 (+)
Gene ID: A49_contig_1089_108
Type: CAZyme
Location: 116010 - 116990 (+)
Type: CAZyme
Location: 116010 - 116990 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C callidus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A49_contig_1089_105 | vegan > omnivore | 1.92475 | 0.00068 |
| A49_contig_1089_105 | vegetarian > omnivore | 1.93038 | 0.00341 |
| A49_contig_1089_106 | vegan > omnivore | 2.02131 | 0.00068 |
| A49_contig_1089_106 | vegetarian > omnivore | 2.10542 | 0.00341 |
| A49_contig_1089_107 | vegan > omnivore | 1.48364 | 0.00068 |
| A49_contig_1089_107 | vegetarian > omnivore | 1.13243 | 0.00341 |
| A49_contig_1089_108 | vegan > omnivore | 1.36665 | 0.00068 |