Cluster: A43.bin_3_CGC55
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: A43.bin_3
- CGC Family ID: CGCFAM_04312
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A43_contig_103 | A43_contig_103_1931 | 2600588 | 2603023 | + | GH127 |
| pfam | A43_contig_103 | A43_contig_103_1932 | 2603096 | 2603695 | - | Bac_DNA_binding | HU-HIG |
| NULL(UNKNOWN) | A43_contig_103 | A43_contig_103_1933 | 2603897 | 2604031 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A43_contig_103 | A43_contig_103_1934 | 2604115 | 2607534 | + | 1.B.14.6.1 |
| pfam | A43_contig_103 | A43_contig_103_1935 | 2607555 | 2609288 | + | SusD_RagB | SusD-like_2 | SusD-like_3 |
| sulfatase | A43_contig_103 | A43_contig_103_1936 | 2609308 | 2610099 | + | S1_15 |
| CAZyme | A43_contig_103 | A43_contig_103_1937 | 2610128 | 2612284 | + | GH89 |
| pfam | A43_contig_103 | A43_contig_103_1938 | 2612293 | 2613435 | + | Gly_kinase |
| TC | A43_contig_103 | A43_contig_103_1939 | 2613442 | 2614698 | + | 2.A.8.1.9 |
| NULL(UNKNOWN) | A43_contig_103 | A43_contig_103_1940 | 2614713 | 2615798 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A43_contig_103 | A43_contig_103_1941 | 2615805 | 2617988 | + | GH89 |
Gene ID: A43_contig_103_1931
Type: CAZyme
Location: 2600588 - 2603023 (+)
Type: CAZyme
Location: 2600588 - 2603023 (+)
Gene ID: A43_contig_103_1932
Type: pfam
Location: 2603096 - 2603695 (-)
Type: pfam
Location: 2603096 - 2603695 (-)
Gene ID: A43_contig_103_1933
Type:
Location: 2603897 - 2604031 (-)
Type:
Location: 2603897 - 2604031 (-)
Gene ID: A43_contig_103_1934
Type: TC
Location: 2604115 - 2607534 (+)
Type: TC
Location: 2604115 - 2607534 (+)
Gene ID: A43_contig_103_1935
Type: pfam
Location: 2607555 - 2609288 (+)
Type: pfam
Location: 2607555 - 2609288 (+)
Gene ID: A43_contig_103_1936
Type: sulfatase
Location: 2609308 - 2610099 (+)
Type: sulfatase
Location: 2609308 - 2610099 (+)
Gene ID: A43_contig_103_1937
Type: CAZyme
Location: 2610128 - 2612284 (+)
Type: CAZyme
Location: 2610128 - 2612284 (+)
Gene ID: A43_contig_103_1938
Type: pfam
Location: 2612293 - 2613435 (+)
Type: pfam
Location: 2612293 - 2613435 (+)
Gene ID: A43_contig_103_1939
Type: TC
Location: 2613442 - 2614698 (+)
Type: TC
Location: 2613442 - 2614698 (+)
Gene ID: A43_contig_103_1940
Type:
Location: 2614713 - 2615798 (+)
Type:
Location: 2614713 - 2615798 (+)
Gene ID: A43_contig_103_1941
Type: CAZyme
Location: 2615805 - 2617988 (+)
Type: CAZyme
Location: 2615805 - 2617988 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides xylanisolvens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A43_contig_103_1932 | vegan > omnivore | 2.22507 | 0.00290 |