Cluster: A43.CMAG_3_CGC11
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: A43.CMAG_3
- CGC Family ID: CGCFAM_03114
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A43_contig_223 | A43_contig_223_1807 | 1920599 | 1921372 | - | 3.A.1.3.14 |
| TC | A43_contig_223 | A43_contig_223_1808 | 1921385 | 1922032 | - | 3.A.1.3.6 |
| TC | A43_contig_223 | A43_contig_223_1809 | 1922111 | 1922932 | - | 3.A.1.3.10 |
| STP | A43_contig_223 | A43_contig_223_1810 | 1923159 | 1925036 | + | Pyr_redox_2 |
| TF | A43_contig_223 | A43_contig_223_1811 | 1925233 | 1925556 | + | GntR |
| TC | A43_contig_223 | A43_contig_223_1812 | 1925549 | 1926442 | + | 3.A.1.126.1 |
| NULL(UNKNOWN) | A43_contig_223 | A43_contig_223_1813 | 1926417 | 1928288 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A43_contig_223 | A43_contig_223_1814 | 1928486 | 1929964 | + | 9.B.160.1.10 |
| TC | A43_contig_223 | A43_contig_223_1815 | 1930286 | 1931737 | - | 2.A.22.5.3 |
| STP | A43_contig_223 | A43_contig_223_1816 | 1932181 | 1932735 | + | Pribosyltran |
| CAZyme | A43_contig_223 | A43_contig_223_1817 | 1932809 | 1933612 | + | GT8 |
Gene ID: A43_contig_223_1807
Type: TC
Location: 1920599 - 1921372 (-)
Type: TC
Location: 1920599 - 1921372 (-)
Gene ID: A43_contig_223_1808
Type: TC
Location: 1921385 - 1922032 (-)
Type: TC
Location: 1921385 - 1922032 (-)
Gene ID: A43_contig_223_1809
Type: TC
Location: 1922111 - 1922932 (-)
Type: TC
Location: 1922111 - 1922932 (-)
Gene ID: A43_contig_223_1810
Type: STP
Location: 1923159 - 1925036 (+)
Type: STP
Location: 1923159 - 1925036 (+)
Gene ID: A43_contig_223_1811
Type: TF
Location: 1925233 - 1925556 (+)
Type: TF
Location: 1925233 - 1925556 (+)
Gene ID: A43_contig_223_1812
Type: TC
Location: 1925549 - 1926442 (+)
Type: TC
Location: 1925549 - 1926442 (+)
Gene ID: A43_contig_223_1813
Type:
Location: 1926417 - 1928288 (+)
Type:
Location: 1926417 - 1928288 (+)
Gene ID: A43_contig_223_1814
Type: TC
Location: 1928486 - 1929964 (+)
Type: TC
Location: 1928486 - 1929964 (+)
Gene ID: A43_contig_223_1815
Type: TC
Location: 1930286 - 1931737 (-)
Type: TC
Location: 1930286 - 1931737 (-)
Gene ID: A43_contig_223_1816
Type: STP
Location: 1932181 - 1932735 (+)
Type: STP
Location: 1932181 - 1932735 (+)
Gene ID: A43_contig_223_1817
Type: CAZyme
Location: 1932809 - 1933612 (+)
Type: CAZyme
Location: 1932809 - 1933612 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
CAG-103
Species
CAG-103 sp000432375
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A43_contig_223_1808 | vegetarian > vegan | 1.37805 | 0.00085 |
| A43_contig_223_1809 | vegetarian > vegan | 1.15910 | 0.00085 |
| A43_contig_223_1814 | vegetarian > omnivore | 1.04035 | 0.00012 |