Cluster: A41.CMAG_2_CGC38
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 7
- Substrate:
- Genome ID: A41.CMAG_2
- CGC Family ID: CGCFAM_04400
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A41_contig_166 | A41_contig_166_2517 | 2866390 | 2867745 | - | GH28 |
| CAZyme | A41_contig_166 | A41_contig_166_2518 | 2867983 | 2869113 | + | GH105 |
| TF | A41_contig_166 | A41_contig_166_2519 | 2869375 | 2873658 | - | HTH_AraC |
| CAZyme | A41_contig_166 | A41_contig_166_2520 | 2873855 | 2876626 | + | GH106 |
| pfam | A41_contig_166 | A41_contig_166_2521 | 2876848 | 2880111 | - | DUF4450 |
| NULL(UNKNOWN) | A41_contig_166 | A41_contig_166_2522 | 2880216 | 2882324 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A41_contig_166 | A41_contig_166_2523 | 2882504 | 2883820 | - | PL1_2 |
| sulfatase | A41_contig_166 | A41_contig_166_2524 | 2883904 | 2885871 | - | S1_27 |
| TC | A41_contig_166 | A41_contig_166_2525 | 2885887 | 2889129 | - | 1.B.14.6.1 |
| CAZyme | A41_contig_166 | A41_contig_166_2526 | 2889479 | 2890963 | - | GH28 |
| CAZyme | A41_contig_166 | A41_contig_166_2527 | 2890979 | 2893507 | - | CE20 | GH105 |
| NULL(UNKNOWN) | A41_contig_166 | A41_contig_166_2528 | 2893674 | 2895542 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A41_contig_166 | A41_contig_166_2529 | 2895555 | 2897054 | - | PL1_2 |
| pfam | A41_contig_166 | A41_contig_166_2530 | 2897331 | 2898578 | - | DcaP |
| NULL(UNKNOWN) | A41_contig_166 | A41_contig_166_2531 | 2898597 | 2899088 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A41_contig_166 | A41_contig_166_2532 | 2899307 | 2900740 | - | 2.A.114.1.4 |
Gene ID: A41_contig_166_2517
Type: CAZyme
Location: 2866390 - 2867745 (-)
Type: CAZyme
Location: 2866390 - 2867745 (-)
Gene ID: A41_contig_166_2518
Type: CAZyme
Location: 2867983 - 2869113 (+)
Type: CAZyme
Location: 2867983 - 2869113 (+)
Gene ID: A41_contig_166_2519
Type: TF
Location: 2869375 - 2873658 (-)
Type: TF
Location: 2869375 - 2873658 (-)
Gene ID: A41_contig_166_2520
Type: CAZyme
Location: 2873855 - 2876626 (+)
Type: CAZyme
Location: 2873855 - 2876626 (+)
Gene ID: A41_contig_166_2521
Type: pfam
Location: 2876848 - 2880111 (-)
Type: pfam
Location: 2876848 - 2880111 (-)
Gene ID: A41_contig_166_2522
Type:
Location: 2880216 - 2882324 (-)
Type:
Location: 2880216 - 2882324 (-)
Gene ID: A41_contig_166_2523
Type: CAZyme
Location: 2882504 - 2883820 (-)
Type: CAZyme
Location: 2882504 - 2883820 (-)
Gene ID: A41_contig_166_2524
Type: sulfatase
Location: 2883904 - 2885871 (-)
Type: sulfatase
Location: 2883904 - 2885871 (-)
Gene ID: A41_contig_166_2525
Type: TC
Location: 2885887 - 2889129 (-)
Type: TC
Location: 2885887 - 2889129 (-)
Gene ID: A41_contig_166_2526
Type: CAZyme
Location: 2889479 - 2890963 (-)
Type: CAZyme
Location: 2889479 - 2890963 (-)
Gene ID: A41_contig_166_2527
Type: CAZyme
Location: 2890979 - 2893507 (-)
Type: CAZyme
Location: 2890979 - 2893507 (-)
Gene ID: A41_contig_166_2528
Type:
Location: 2893674 - 2895542 (-)
Type:
Location: 2893674 - 2895542 (-)
Gene ID: A41_contig_166_2529
Type: CAZyme
Location: 2895555 - 2897054 (-)
Type: CAZyme
Location: 2895555 - 2897054 (-)
Gene ID: A41_contig_166_2530
Type: pfam
Location: 2897331 - 2898578 (-)
Type: pfam
Location: 2897331 - 2898578 (-)
Gene ID: A41_contig_166_2531
Type:
Location: 2898597 - 2899088 (-)
Type:
Location: 2898597 - 2899088 (-)
Gene ID: A41_contig_166_2532
Type: TC
Location: 2899307 - 2900740 (-)
Type: TC
Location: 2899307 - 2900740 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola coprocola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A41_contig_166_2518 | vegetarian > vegan | 1.17085 | 0.01450 |
| A41_contig_166_2532 | vegetarian > vegan | 1.04362 | 0.01450 |